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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgtaatacttcagttccacagtttttactattaaggatttgtgaatttacttaacaatgaatctcagTATGTCCAACGTGATGAGGAAGGAACAAGAAAGGAGCGTGAAAGAAGCTTGTCAGTGTCTGAAACTACGCTAGTTCTCGATGAAACCAATATGACTACAT

Basic information

species Arabidopsis thaliana
transcript AT3G17890.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125146239|gb|EL181108.1|EL181108
EST:     CTGAAGATGATGATCTCACAGTTGATGACTTATTAAGCTTTGCTAATGAG                         TATGTCCAACGTGATGAGGAAGGAACAAGAAAG
genomic: CTGAAGATGATGATCTCACAGTTGATGACTTATTAAGCTTTGCTAATGAGgtaatgtaat ... tgaatctcagTATGTCCAACGTGATGAGGAAGGAACAAGAAAG
EST: gi|19799932|gb|AU231222.1|AU231222
EST:     TGAAGATGATGATCTCACAGGTTGATGACTTATTAAGCTTTGCTAATGAG                         TATGTCCAACGTGATGAGGAAGGAACAAGAAAGGAGCGTGAAAGAAGCTTG
genomic: TGAAGATGATGATCTCACA-GTTGATGACTTATTAAGCTTTGCTAATGAGgtaatgtaat ... tgaatctcagTATGTCCAACGTGATGAGGAAGGAACAAGAAAGGAGCGTGAAAGAAGCTTG
EST: gi|124908165|gb|EH982245.1|EH982245
EST:     ATGATCTCACAGTTGATGACTTATTAAGCTTTGCTAATGAG                         TATGTCCAACGTGATGAGGAAGGAACAAGAAAGGAGCGTGAAAGAAGCTTG
genomic: ATGATCTCACAGTTGATGACTTATTAAGCTTTGCTAATGAGgtaatgtaat ... tgaatctcagTATGTCCAACGTGATGAGGAAGGAACAAGAAAGGAGCGTGAAAGAAGCTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttccacagtttttactattaaggatttgtgaatttacttaacaatgaatctcagTATGTCCAACGTGATGAGGAAGGAACAAGAAAGGAGCGTGAAAGAAGCTTGTCAGTGTCTGAAACTACGCTAGTTCTCGATGAAACCAATATGACTACAT
                                    acttaac  putative branch site (score: 3)
       agtttttactattaa  TA-rich tract