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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatactttattagttcttgctttctctttcgtcgtttaaccgtatagtttattatcctcaattttgttcttttttgtgcttcttgaattgcagTTTGAGCTTGACTATCCAAGTGAATACATCACGGCAGTTGATGGCACCTACGATGCAATCTTTGGGAATGAACCAATCGTAAATATGCTTAGGTTCACGA

Basic information

species Arabidopsis thaliana
transcript AT3G16460.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124931670|gb|EL009006.1|EL009006
EST:     TGTAGAAGGAAAAGAACATGGAAAACCCACATTGCTTAGGATTTGAAGAG                         TTTGAGCTTGACTAT
genomic: TGTAGAAGGAAAAGAACATGGAAAACCCACATTGCTT-GGATTTGAAGAGgtatacttta ... tgaattgcagTTTGAGCTTGACTAT
EST: gi|116445286|gb|EG487878.1|EG487878
EST:     TTGTAGAAGGAAAAGAACATGGAAAACCCACATTGCTTGGATTTGAAGAG                         TTTGAGCTTGACTATCCAAGTGAATACATCACGGCAGTTGATGGCACCTAC
genomic: TTGTAGAAGGAAAAGAACATGGAAAACCCACATTGCTTGGATTTGAAGAGgtatacttta ... tgaattgcagTTTGAGCTTGACTATCCAAGTGAATACATCACGGCAGTTGATGGCACCTAC
EST: gi|124709030|gb|EH800432.1|EH800432
EST:     GAACATGGAAAACCCACATTGCTTGGATTTGAAGAG                         TTTGAGCTTGACTATCCAAGTGAATACATCACGG
genomic: GAACATGGAAAACCCACATTGCTTGGATTTGAAGAGgtatacttta ... tgaattgcagTTTGAGCTTGACTATCCAAGTGAATACATCACGG
EST: gi|116410592|gb|EG453184.1|EG453184
EST:     TTGTAGAAGGAAAAGAACATGGAAAACCCACATTGCTTGGATTTGAAGAG                         TTTGAGCTTGACTATCCAAGTGAATACATCACGGCAGTTGATGGCACCTAC
genomic: TTGTAGAAGGAAAAGAACATGGAAAACCCACATTGCTTGGATTTGAAGAGgtatacttta ... tgaattgcagTTTGAGCTTGACTATCCAAGTGAATACATCACGGCAGTTGATGGCACCTAC
EST: gi|125324298|gb|EL338378.1|EL338378
EST:     AAAACCCACATTGCTTGGATTTGAAGAG                         TTTGAGCTTGACTATCCAAGTGAATACATCACGGCAGTTGATGGCACCTAC
genomic: AAAACCCACATTGCTTGGATTTGAAGAGgtatacttta ... tgaattgcagTTTGAGCTTGACTATCCAAGTGAATACATCACGGCAGTTGATGGCACCTAC
EST: gi|116479659|gb|EG522251.1|EG522251
EST:     TTGTAGAAGGAAAAGAACATGGAAAACCCACATTGCTTGGATTTGAAGAG                         TTTGAGCTTGACTATCCAAGTGAATACATCACGGCAGTTGATGGCACCTAC
genomic: TTGTAGAAGGAAAAGAACATGGAAAACCCACATTGCTTGGATTTGAAGAGgtatacttta ... tgaattgcagTTTGAGCTTGACTATCCAAGTGAATACATCACGGCAGTTGATGGCACCTAC
EST: gi|116410591|gb|EG453183.1|EG453183
EST:     TTGTAGAAGGAAAAGAACATGGAAAACCCACATTGCTTGGATTTGAAGAG                         TTTGAGCTTGACTATCCAAGTGAATACATCACGGCAGTTGATGGCACCTAC
genomic: TTGTAGAAGGAAAAGAACATGGAAAACCCACATTGCTTGGATTTGAAGAGgtatacttta ... tgaattgcagTTTGAGCTTGACTATCCAAGTGAATACATCACGGCAGTTGATGGCACCTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accgtatagtttattatcctcaattttgttcttttttgtgcttcttgaattgcagTTTGAGCTTGACTATCCAAGTGAATACATCACGGCAGTTGATGGCACCTACGATGCAATCTTTGGGAATGAACCAATCGTAAATATGCTTAGGTTCACGA
 gtttaac  putative branch site (score: 3)
                       ttttgttcttttttgt  putative PPT
                     aattttgttctttttt  TA-rich tract