1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatgcacgcttaagaccaactatttttattggtttcccttttcaactaatttcactattcattatgcatttatctatgtagTTCGAGCTTGAATCAGACGAATATATAACATCCGTGGAAGGATACTACGAAAAAAACTTTGGAGTTGATACTGTAGTGACAACGCTGATTTTCAAGACTA
species | Arabidopsis thaliana |
transcript | AT3G16460.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATTGCTAGGATTCGAAGAG TTCGAGCTTGAATCAGACGAATATATAACATCCGTGGAAGGATACTACGNNEST: gi|116412265|gb|EG454857.1|EG454857
genomic: ATTGCTAGGATTCGAAGAGgtatgcacgc ... atctatgtagTTCGAGCTTGAATCAGACGAATATATAACATCCGTGGAAGGATACTACGAA
EST: TTGTTTTTGGAGATGAACGTGGAACGAGAACATTGCTAGGATTCGAAGAG TTCGAGCTTGAATCAGACGAATATATAACATCCGTGGAAGGATACTACGNN
genomic: TTGTTTTTGGAGATGAACGTGGAACGAGAACATTGCTAGGATTCGAAGAGgtatgcacgc ... atctatgtagTTCGAGCTTGAATCAGACGAATATATAACATCCGTGGAAGGATACTACGAA
tattggtttcccttttcaactaatttcactattcattatgcatttatctatgtagTTCGAGCTTGAATCAGACGAATATATAACATCCGTGGAAGGATACTACGAAAAAAACTTTGGAGTTGATACTGTAGTGACAACGCTGATTTTCAAGACTA
aactaat putative branch site (score: 2)
tttatct putative PPT
ttttcaactaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcacgcttaagaccaactatttttattggtttcccttttcaactaatttcactattcattatgcatttatctatgtagTTCGAGCTTGAATCAGACGAATATATAACATCCGTGGAAGGATACTACGAAAAAAACTTTGGAGTTGATACTGTAGTGACAACGCTGATTTTCAAGACTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT