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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgattcatcgaaattttcaaatattcttgattcttgaattcttgatcttgattttgggaatatttttttattgtgtgtgtagCTTGATGATTGGGTGTTATGTAGAATCTACAAGAAGAACAACGCAAGTCGACATGTTGATAACGATAAGGATCATGATATGATCGATTACATTTTCAGGA

Basic information

species Arabidopsis thaliana
transcript AT3G15510.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G15510.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA12G34990.1 (Glycine max), 3'ss of exon 2
-------gtatgattcatcgaaattttcaaatattcttgattcttg----aattcttgatcttgat----tttgggaatatttttttattgtgtgtgtagCTTGATGATTGGGTGTTATGTAGAATCTACAAGAAGAACAACGCAAGTCGACATGTTGATAACGATAAGGATCATGATATGATCGATTACATTTTCAGGA
       | || |   ||     |||  | || |        |||     ||||  |||  ||| |     ||  |||| || | ||  ||||||| |||||||||||||||||| | ||  ||||||||||||||| |||| |   | |           |  || |     | |||   || ||| ||||  |  |  
tgtccatgaattaaatattacgctttatatatctatccatccctttgggtaatttctgaatttggtggtgcttttgaattttgtgttggtgtgtgtctagCTTGATGATTGGGTGCTGTGCCGAATCTACAAGAAGAGCAACACGCATAGGTCACCCATGGAGCATGAAAGGGAAGATTCAATGGATGACATGATTGGAG

upper sequence: AT3G15510.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA13G35560.1 (Glycine max), 3'ss of exon 2
--------------gtatgattcatcgaaattttcaaatattcttgattcttgaattct--tgatct-tgattttgggaatatttttttattgtgtgtgtagCTTGATGATTGGGTGTTATGTAGAATCTACAAGAAGAACAACGCAAGTCGACATGTTGATAACGATAAGGATCATGATATGATCGATTACATTTTCAGGA
              || |  |||||   ||||    | | | ||| ||   |   ||    |||| | ||| |||||   | |   |||  ||||| | |||||||||||||||||| | ||  ||||||||||||||| |||| |   | |           |  || |     | |||   || ||| ||||  |  |  
attctattatctaagttttgttcat--gaattaaatattgtgctttatatatccctttgggtgatttctgaatttggtgctttggattttgtgtgtctatagCTTGATGATTGGGTGCTGTGCCGAATCTACAAGAAGAGCAACACGCATAGGTCACCCATGGAGCATGACAGGGAAGATTCAATGGATGACATGATTGGAG

upper sequence: AT3G15510.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv19s0014g03300.t01 (Vitis vinifera), 3'ss of exon 2
gtatgattcatcgaaattttcaaatattcttgattcttgaattcttgatcttgattttgggaatatttttttattgtgtgtgtagCTTGATGATTGGGTGTTATGTAGAATCTACAAGAAGAACAACGCAAGTCGACATGTTGATAACGATAAGGATCATGATATGATCGAT-TACATTTTCAGGA
|||  ||||       |  ||  ||| ||  |||     | ||  |||| |   | |||  |  ||||  ||  | |||   |||||||||||||||||| ||||| |||||||||||||||||||| |   | ||    | |||   || |||||| |    |||  |||  | | |   | || 
gtactattc-------tgatctgataatccggat----aagttgatgatttatctgttgatataatttaatttctttgt---tagCTTGATGATTGGGTGCTATGTCGAATCTACAAGAAGAACAACACGCATAGAACGCTGGATCCTGACAAGGATGACTCCATGGACGACATGCTTGGGCCGG-


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgattcttgaattcttgatcttgattttgggaatatttttttattgtgtgtgtagCTTGATGATTGGGTGTTATGTAGAATCTACAAGAAGAACAACGCAAGTCGACATGTTGATAACGATAAGGATCATGATATGATCGATTACATTTTCAGGA
                  tcttgat  putative branch site (score: 4)
                       attttgggaatatttt  TA-rich tract