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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTTCACTACCTCAAACGCAAAGCAGCCTCTGCTCCTTTACCTGTCGCCATCATCGCCGAAGTCGATCTCTATAAATTTGATCCATGGGAACTTCCCGgtacgtacgacctcatcatcatcatcatcaacaactacttttttatatatagtattatttgatttatatgaatttgtgaccttttttttggttatgatgatctaaatctttttcttcttttttctataatttttttttggtttgtggattcgtttgttgcag

Basic information

species Arabidopsis thaliana
transcript AT3G15510.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G15510.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: LOC_Os07g37920.1 (Oryza sativa), 5'ss of exon 1
GTTGTTCACTACCTCAAACGCAAAGCAGCCTCTGCTCCTTTACCTGTCGCCATCATCGCCGAAGTCGATCTCTATAAATTTGATCCATGGGAACTTCCCGgtacgtacgacctcatcatcatcatcatcaacaactacttttttata-tatagtattatttgatttatatgaatttgtgaccttttttttggttatgatgatctaaatctttttcttcttttttctataatttttttttggtttgtggattcgtttgttgcag
|| || |||||||||||    || || ||||| | |||  | || ||| ||||||||||||| ||||||||||| || || ||||| ||||| || |||||||||||  |  | ||||    || |   | |||  |    || | | | || |||||      ||||||  | |  |  | |   | |   ||||    |   |||                                                        
GTGGTGCACTACCTCAAGAAGAAGGCCGCCTCCGTTCCGCTCCCCGTCACCATCATCGCCGAGGTCGATCTCTACAAGTTCGATCCCTGGGATCTCCCCGgtacgta--atttaatcacttacacccataccaatcataaattaagaatttattattac--agcttatatatactattatcatgcatgtatattatctaaa---aaa--------------------------------------------------------

upper sequence: AT3G15510.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA13G35560.1 (Glycine max), 5'ss of exon 1
GTTGTTCACTACCTCAAACGCAAAGCAGCCTCTGCTCCTTTACCTGTCGCCATCATCGCCGAAGTCGATCTCTATAAATTTGATCCATGGGAACTTCCCGgtacgtacgacctcatcatcatcatcatcaacaactacttttttatatatagtattatttgatttatatgaatttgtgaccttttttttggttatgatgatctaaatctttttcttcttttttctataatttttttttggttt-gtggattcgtttgttgcag
|| ||||||||||||||    |||||||| ||||||||| | || || |||||||||||||| || |||||||| || || ||||||||||| || ||||||| || |    |||   |||||  || | | | | |    || | |  |    ||     | | | |||  |||||    |  |||||  ||   || || ||       || || | |||  ||| |||||| |||  ||| |||   | |   |      
GTAGTTCACTACCTCAAGAAAAAAGCAGCTTCTGCTCCTCTTCCGGTAGCCATCATCGCCGAGGTTGATCTCTACAAGTTCGATCCATGGGAGCTACCCGgtatgttc---ttcaatttcatc--caacga-atcaaaagattcaaactttacgtt-caaaactcaaatgggtttgt--tttactttttattttgtattattta------ctttttgtatttattatgatttttctttatttttgtgtggttggcag------

upper sequence: AT3G15510.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA12G34990.1 (Glycine max), 5'ss of exon 1
GTTGTTCACTACCTCAAACGCAAAGCAGCCTCTGCTCCTTTACCTGTCGCCATCATCGCCGAAGTCGATCTCTATAAATTTGATCCATGGGAACTTCCCGgtacgtacgacctcatcatcatcatcatcaacaactacttttttatatatagtattatttgatttatatgaatttgtgaccttttttttggttatgatgatctaaatctttttcttcttttttctataatttttttttggtttgtggattcgtttgttgcag
|| ||||||||||||||    ||| |||| ||||||||| | || || ||||| |||||||| || |||||||| || || ||||||||||| || ||||||| || |      || |   |||||      | | |    || | |  |    ||     | | | |||  | ||     ||||||||  |||| || ||    ||          |||| | |||| ||| ||| |||||    |               
GTGGTTCACTACCTCAAGAAAAAAACAGCTTCTGCTCCTCTTCCGGTAGCCATAATCGCCGAGGTTGATCTCTACAAGTTCGATCCATGGGAGCTACCCGgtatgttc--ttcaattaatttcatccaacgaatcaaaagattcaaacttcacgtt-caaaactcaaatgggtctgctttgttttttttatttattattattatgat----------ttttctttatattttgtttgtggttaacag---------------

upper sequence: AT3G15510.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv19s0014g03300.t01 (Vitis vinifera), 5'ss of exon 1
GTTGTTCACTACCTCAAACGCAAAGCAGCCTCTGCTCCTTTACCTGTCGCCATCATCGCCGAAGTCGATCTCTATAAATTTGATCCATGGGAACTTCCCGgta-----cgtacgacctcatcatcatcatcatcaacaactacttttttatatatagtattatttgatttatatgaatttgtgaccttttttttggttatgatgatctaaatctttttcttcttttttctataatttttttttggtttgtggattcgtttgttgcag
|| |||||||| || ||    || ||  | ||||||||| | || |||||||| ||||| || || ||||||||||| |||||||| |||||||| |||||||     | |   ||| || | | || || || ||  | ||  |  |||| |||   || | ||| | | ||  |  ||   |         || | ||  |     || |||                                                     
GTAGTTCACTATCTGAAGAAGAAGGCCTCATCTGCTCCTCTTCCGGTCGCCATAATCGCAGAGGTTGATCTCTATAAGTTTGATCCCTGGGAACTCCCCGgtaacttacatcaaaccccagc-taattatgattaa-gattatgtgattatgtatg--atgaattg-tatgtaaaaggttagaaagaaagccatgctgatatttgatcaattctcag--------------------------------------------------