1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttggtagcttctgtttcacttaaaacctatcctgtgagtatattgtcgtttgccataatcactcatatttgaaatccggcacagGTTCTCACTTGTGGGGATAATTCATCGCATTGCTGTGGTCATTTAGATACTAGCCGTCCAATATTTAGGCCTAAGCTTGTTGAGGCTTTGAAGGGGACTC
species | Arabidopsis thaliana |
transcript | AT3G15430.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTTCGTATTGCAATCTGGACAG GTTCTCACTTGTGGGGATAATTCATCGCATTGCTGTGGTCATTTAGATACTEST: gi|125032997|gb|EL105266.1|EL105266
genomic: TTTCGTATTGCAATCTGGACAGgttggtagct ... tccggcacagGTTCTCACTTGTGGGGATAATTCATCGCATTGCTGTGGTCATTTAGATACT
EST: TTCGTATTGCAATCTGGACAG GTTCTCACTTGTGGGGATAATTCATCGCATTGCTGTGGTCATTTAGATACTEST: gi|164145198|gb|ES102180.1|ES102180
genomic: TTCGTATTGCAATCTGGACAGgttggtagct ... tccggcacagGTTCTCACTTGTGGGGATAATTCATCGCATTGCTGTGGTCATTTAGATACT
EST: AAGTCTCAGCCACACAGAACCATTCTGCTTTCGTATTGCAATCTGGACAG GTTCTCACTTGTGGG
genomic: AAGTCTCAGCCACACAGAACCATTCTGCTTTCGTATTGCAATCTGGACAGgttggtagct ... tccggcacagGTTCTCACTTGTGGG
tcctgtgagtatattgtcgtttgccataatcactcatatttgaaatccggcacagGTTCTCACTTGTGGGGATAATTCATCGCATTGCTGTGGTCATTTAGATACTAGCCGTCCAATATTTAGGCCTAAGCTTGTTGAGGCTTTGAAGGGGACTC
atatttgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggtagcttctgtttcacttaaaacctatcctgtgagtatattgtcgtttgccataatcactcatatttgaaatccggcacagGTTCTCACTTGTGGGGATAATTCATCGCATTGCTGTGGTCATTTAGATACTAGCCGTCCAATATTTAGGCCTAAGCTTGTTGAGGCTTTGAAGGGGACTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG