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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGCTCTTTGCCAATTGTGAGGGAAACTGGAAGCGGCTTTTTAGTTTCTTGCAGTCAGTTGAGCAATCCTCAGATATGGTTGAAACCTCTCAAGGCAAAgtatgctttctgtcatttcatatagtcagtagttttaggtagttcagtgaagttgctatggagaaagttgattcttggttaatttggtttagaagtctcagatgcatttcttttattttttctgcag

Basic information

species Arabidopsis thaliana
transcript AT3G15430.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86060705|gb|DR356462.1|DR356462
EST:     TGCAGTCAGTTGAGCAATCCTCAGATATGGTTGAAACCTCTCAAGGCAAA                         ATGCAAATTGCAACAGGAAAGTATCACACTTTGCTAATCAACAACTCAAAG
genomic: TGCAGTCAGTTGAGCAATCCTCAGATATGGTTGAAACCTCTCAAGGCAAAgtatgctttc ... ttttctgcagATGCAAATTGCAACAGGAAAGTATCACACTTTGCTAATCAACAACTCAAAG
EST: gi|86060704|gb|DR356461.1|DR356461
EST:     TGCAGTCAGTTGAGCAATCCTCAGATATGGTTGAAACCTCTCAAGGCAAA                         ATGCAAATTGCAACAGGAAAGTATCACACTTTGCTAATCAACAACTCAAAG
genomic: TGCAGTCAGTTGAGCAATCCTCAGATATGGTTGAAACCTCTCAAGGCAAAgtatgctttc ... ttttctgcagATGCAAATTGCAACAGGAAAGTATCACACTTTGCTAATCAACAACTCAAAG
EST: gi|124719839|gb|EH811241.1|EH811241
EST:     TGCAGTCAGTTGAGCAATCCTCAGATATGGTTGAAACCTCTCAAGGCAAA                         ATGCAAATTGCAACAGGAAAGTATCACA
genomic: TGCAGTCAGTTGAGCAATCCTCAGATATGGTTGAAACCTCTCAAGGCAAAgtatgctttc ... ttttctgcagATGCAAATTGCAACAGGAAAGTATCACA