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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAGGAAAGATCTTCCACAAACCTATTGGCCCTACGGAAAATCCCGCGACTACCCCAACGGCAAGTTTTCCGACGGCCACATCGTCCCCGACTTCATCGgtatgcttttgattattctaagatatctatttgattattacagatgtgcatatatatacaaccataaatatagaaacaagataattattaaacatggtgactaatgactatgtag

Basic information

species Arabidopsis thaliana
transcript AT3G14210.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116482268|gb|EG524860.1|EG524860
EST:     CTACCCCAACGGCAAGTTTTCCGACGGCCACATCGTCCCCGACTTCATCG                         CTGATTTCATCTCTATTCCGAATGGAGTACTCCCACCGGTGCTTAAACCGG
genomic: CTACCCCAACGGCAAGTTTTCCGACGGCCACATCGTCCCCGACTTCATCGgtatgctttt ... gactatgtagCTGATTTCATCTCTATTCCGAATGGAGTACTCCCACCGGTGCTTAAACCGG
EST: gi|116434782|gb|EG477374.1|EG477374
EST:     CTACCCCAACGGCAAGTTTTCCGACGGCCACATCGTCCCCGACTTCATCG                         CTGATTTCATCTCTATTCCGAATGGAGTACTCCCACCGGTGCTTAAACCGG
genomic: CTACCCCAACGGCAAGTTTTCCGACGGCCACATCGTCCCCGACTTCATCGgtatgctttt ... gactatgtagCTGATTTCATCTCTATTCCGAATGGAGTACTCCCACCGGTGCTTAAACCGG
EST: gi|116482264|gb|EG524856.1|EG524856
EST:     CTACCCCAACGGCAAGTTTTCCGACGGCCACATCGTCCCCGACTTCATCG                         CTGATTTCATCTCTATTCCGAATGGAGTACTCCCACCGGTGCTTAAACCGG
genomic: CTACCCCAACGGCAAGTTTTCCGACGGCCACATCGTCCCCGACTTCATCGgtatgctttt ... gactatgtagCTGATTTCATCTCTATTCCGAATGGAGTACTCCCACCGGTGCTTAAACCGG
EST: gi|116434796|gb|EG477388.1|EG477388
EST:     CTACCCCAACGGCAAGTTTTCCGACGGCCACATCGTCCCCGACTTCATCG                         CTGATTTCATCTCTATTCCGAATGGAGTACTCCCACCGGTGCTTAAACCGG
genomic: CTACCCCAACGGCAAGTTTTCCGACGGCCACATCGTCCCCGACTTCATCGgtatgctttt ... gactatgtagCTGATTTCATCTCTATTCCGAATGGAGTACTCCCACCGGTGCTTAAACCGG
EST: gi|116406283|gb|EG448875.1|EG448875
EST:     CTACCCCAACGGCAAGTTTTCCGACGGCCACATCGTCCCCGACTTCATCG                         CTGATTTCATCTCTATTCCGAATGGAGTACTCCCACCGGTGCTTAAACCGG
genomic: CTACCCCAACGGCAAGTTTTCCGACGGCCACATCGTCCCCGACTTCATCGgtatgctttt ... gactatgtagCTGATTTCATCTCTATTCCGAATGGAGTACTCCCACCGGTGCTTAAACCGG
EST: gi|125135156|gb|EL175636.1|EL175636
EST:     CTACCCCAACGGCAAGTTTTCCGACGGCCACATCGTCCCCGACTTCATCG                         CTGATTTCATCTCTATT
genomic: CTACCCCAACGGCAAGTTTTCCGACGGCCACATCGTCCCCGACTTCATCGgtatgctttt ... gactatgtagCTGATTTCATCTCTATT
EST: gi|116477451|gb|EG520043.1|EG520043
EST:     CTACCCCAACGGCAAGTTTTCCGACGGCCACATCGTCCCCGACTTCATCG                         CTGATTTCATCTCTATTCCGAATGGAGTACTCCCACCGGTGCTTAAACCGG
genomic: CTACCCCAACGGCAAGTTTTCCGACGGCCACATCGTCCCCGACTTCATCGgtatgctttt ... gactatgtagCTGATTTCATCTCTATTCCGAATGGAGTACTCCCACCGGTGCTTAAACCGG
EST: gi|116415707|gb|EG458299.1|EG458299
EST:     CTACCCCAACGGCAAGTTTTCCGACGGCCACATCGTCCCCGACTTCATCG                         CTGATTTCATCTCTATTCCGAATGGAGTACTCCCACCGGTGCTTAAACCGG
genomic: CTACCCCAACGGCAAGTTTTCCGACGGCCACATCGTCCCCGACTTCATCGgtatgctttt ... gactatgtagCTGATTTCATCTCTATTCCGAATGGAGTACTCCCACCGGTGCTTAAACCGG
EST: gi|152034139|gb|BP868454.2|BP868454
EST:     CTACCCCAACGGCAAGTTTTCCGACGGCCACATCGTCCCCGACTTCATCG                         CTGATTTCATCTCTATTCCGAATGGAGTACTCCCACGGGTGCTTAAACCGG
genomic: CTACCCCAACGGCAAGTTTTCCGACGGCCACATCGTCCCCGACTTCATCGgtatgctttt ... gactatgtagCTGATTTCATCTCTATTCCGAATGGAGTACTCCCACCGGTGCTTAAACCGG
EST: gi|116444596|gb|EG487188.1|EG487188
EST:     CTACCCCAACGGCAAGTTTTCCGACGGCCACATCGTCCCCGACTTCATCG                         CTGATTTCATCTCTATTCCGAATGGAGTACTCCCGCCGGTGCTTAAACCGG
genomic: CTACCCCAACGGCAAGTTTTCCGACGGCCACATCGTCCCCGACTTCATCGgtatgctttt ... gactatgtagCTGATTTCATCTCTATTCCGAATGGAGTACTCCCACCGGTGCTTAAACCGG
EST: gi|116482265|gb|EG524857.1|EG524857
EST:     CTACCCCAACGGCAAGTTTTCCGACGGCCACATCGTCCCCGACTTCATCG                         CTGATTTCATCTCTATTCCGAATGGAGTACTCCCACCGGTGCTTAAACCGG
genomic: CTACCCCAACGGCAAGTTTTCCGACGGCCACATCGTCCCCGACTTCATCGgtatgctttt ... gactatgtagCTGATTTCATCTCTATTCCGAATGGAGTACTCCCACCGGTGCTTAAACCGG
EST: gi|116482271|gb|EG524863.1|EG524863
EST:     CTACCCCAACGGCAAGTTTTCCGACGGCCACATCGTCCCCGACTTCATCG                         CTGATTTCATCTCTATTCCGAATGGAGTACTCCCACCGGTGCTTAAACCGG
genomic: CTACCCCAACGGCAAGTTTTCCGACGGCCACATCGTCCCCGACTTCATCGgtatgctttt ... gactatgtagCTGATTTCATCTCTATTCCGAATGGAGTACTCCCACCGGTGCTTAAACCGG
EST: gi|116459232|gb|EG501824.1|EG501824
EST:     GACGGCCACATCGTCCCCGACTTCATCG                         CTGATTTCATCTCTATTCCGAATGGAGTACTCCCACCGGTGCTTAAACCGG
genomic: GACGGCCACATCGTCCCCGACTTCATCGgtatgctttt ... gactatgtagCTGATTTCATCTCTATTCCGAATGGAGTACTCCCACCGGTGCTTAAACCGG
EST: gi|116477450|gb|EG520042.1|EG520042
EST:     CTACCCCAACGGCAAGTTTTCCGACGGCCACATCGTCCCCGACTTCATCG                         CTGATTTCATCTCTATTCCGAATGGAGTACTCCCACCGGTGCTTAAACCGG
genomic: CTACCCCAACGGCAAGTTTTCCGACGGCCACATCGTCCCCGACTTCATCGgtatgctttt ... gactatgtagCTGATTTCATCTCTATTCCGAATGGAGTACTCCCACCGGTGCTTAAACCGG
EST: gi|116434778|gb|EG477370.1|EG477370
EST:     CTACCCCAACGGCAAGTTTTCCGACGGCCACATCGTCCCCGACTTCATCG                         CTGATTTCATCTCTATTCCGAATGGAGTACTCCCACCGGTGCTTAAACCGG
genomic: CTACCCCAACGGCAAGTTTTCCGACGGCCACATCGTCCCCGACTTCATCGgtatgctttt ... gactatgtagCTGATTTCATCTCTATTCCGAATGGAGTACTCCCACCGGTGCTTAAACCGG