1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagggatttgtctactttacatggtgttaatttagagattcatgattaaatcttaagaacgaccctttttgtttctggtttgaagGAGGAAGCTCCATTTACAATCTCGGATCTGTCTGAAGAGAACATGTTAGATTCAAACTATGGGGATGAACTGTCTTCTGAAGAATTCGTGTTGCAGGATC
species | Arabidopsis thaliana |
transcript | AT3G12320.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGGTGGTAGGGAAGTCCCTATGTTCCATTGTCATGACATGTCTTTCAAG GAGGAAGCTCCATTTACAATCTCGGATCTGTCTGAAGAGAACATGTTAGATEST: gi|125031781|gb|EL104050.1|EL104050
genomic: GTGGTGGTAGGGAAGTCCCTATGTTCCATTGTCATGACATGTCTTTCAAGgtaagggatt ... tggtttgaagGAGGAAGCTCCATTTACAATCTCGGATCTGTCTGAAGAGAACATGTTAGAT
EST: AAGTCCCTATGTTCCATTGTCATGACATGTCTTTCAAG GAGGAAGCTCCATTTACAATCTCGGATCTGTCTGAAGAGAACA
genomic: AAGTCCCTATGTTCCATTGTCATGACATGTCTTTCAAGgtaagggatt ... tggtttgaagGAGGAAGCTCCATTTACAATCTCGGATCTGTCTGAAGAGAACA
tttagagattcatgattaaatcttaagaacgaccctttttgtttctggtttgaagGAGGAAGCTCCATTTACAATCTCGGATCTGTCTGAAGAGAACATGTTAGATTCAAACTATGGGGATGAACTGTCTTCTGAAGAATTCGTGTTGCAGGATC
ccctttttgtttct CT-rich tract
atgattaaatcttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagggatttgtctactttacatggtgttaatttagagattcatgattaaatcttaagaacgaccctttttgtttctggtttgaagGAGGAAGCTCCATTTACAATCTCGGATCTGTCTGAAGAGAACATGTTAGATTCAAACTATGGGGATGAACTGTCTTCTGAAGAATTCGTGTTGCAGGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA