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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttctttctctttgtgcttgttagatttgaatccatacatttttcgaattgtttctgaaagtagtgagcttgatttgttcattcatcagGTTGATAGATCGATCGATTGATTTTATGGATTGTTATGCTGAAGAGCTTGTTGTGCCTAATTATCAAGAATCATCATCAGAGACATACCCATCTACTGGT

Basic information

species Arabidopsis thaliana
transcript AT3G12320.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116416096|gb|EG458688.1|EG458688
EST:     GGTTTCTGATTTGGGTCTGATTCAAAACTCTCTCATCCGTTCACTACAAA                         GTTGATAGATCGATCGATTGATTTTATGGATTGTTATGCTGAAGAGCTTGT
genomic: GGTTTCTGATTTGGGTCTGATTCAAAACTCTCTCATCCGTTCACTACAAAgtgagtttct ... cattcatcagGTTGATAGATCGATCGATTGATTTTATGGATTGTTATGCTGAAGAGCTTGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atacatttttcgaattgtttctgaaagtagtgagcttgatttgttcattcatcagGTTGATAGATCGATCGATTGATTTTATGGATTGTTATGCTGAAGAGCTTGTTGTGCCTAATTATCAAGAATCATCATCAGAGACATACCCATCTACTGGT
                                 gcttgat  putative branch site (score: 5)
                                       tttgttc  CT-rich tract
            aattgttt  TA-rich tract