Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTCTTGGTTCCAGTTCATCGGATAATGTCGCGAGCTACATGGGTCAGATGGCCATGGCAATGGGGCAGTTAGGCACCCTCGAAGGATTCATACGCCAGgtactttagaaatgtggatgttatcgagatataccatatcttttcatcgtcacaaagagataaatattttattttatatatgaatccgtctgttatggagttcatagggcatttcttggtggcag

Basic information

species Arabidopsis thaliana
transcript AT3G12250.5
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G12250.5 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: LOC_Os07g48820.2 (Oryza sativa), 5'ss of exon 9
AACTCTTGGTT---CCAGTTCATCGGATAATGTCGCGAGCTACATGGGTCAGATGGCCATGGCAATGGGGCAGTTAGGCACCCTCGAAGGATTCATACGCCAGgta----------ctttagaaatgtggatgttatcgagat--ataccat--atcttttcatcgtcacaaagagataaatattttattt-tatatatgaatccgtctgttatggagttcatagggcatttcttggtggcag
   ||| ||||   |  | || || |  ||||| |||| |||||||||||||||||| ||||| |||||  |  |||| || |||||    ||| |  |||||| |          | ||  || |||    ||| |   |    | | |||  || | || |  |       | |  | || |    |||  |   || ||  | |   || ||    |  |   |  ||  ||  || |||
---TCTCGGTTCATCAGGGTCTTCTGGGAATGTGGCGAACTACATGGGTCAGATGGCAATGGCCATGGGTAAACTAGGAACGCTCGAGAATTTCCTTTGCCAGgcaagtatcttcaccttctaagtgtcatcgttcttctgcctgacaacatggatttattaactggtgattcgtgtcagatgtcgcctttgcagtgattaaagcttagattttgactattcttttggtttcatttttgtcag

upper sequence: AT3G12250.5 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GRMZM2G361847_T04 (Zea mays), 5'ss of exon 9
AACTCTTGGTTC---CAGTTCATCGGATAATGTCGCGAGCTACATGGGTCAGATGGCCATGGCAATGGGGCAGTTAGGCACCCTCGAAGGATTCATACGCCAGgtactttagaaatgtggatgttatcgagatataccatatcttttcatcgtcacaaagagataaatattttattttatatatgaatccgtctgttatggagttcatagggcatttcttggtggcag
   ||| ||| |     |||| || |  ||||| || | |||||||||||||||||||||||| |||||  |  | || || || ||    ||  | ||||| |||       | | || || ||   | |        ||   |||  | |          |||| | |   ||  ||  ||||  |   | | | ||| ||                         
---TCTCGGTCCAGCAGGTTCTTCAGGAAATGTGGCAAACTACATGGGTCAGATGGCCATGGCCATGGGCAAACTCGGGACGCTAGAGAATTTTCTTCGCCAAgtaagcatctactttgtatctttgtggggcg----gtactgtttatttggttttgctgcataagtttcgaatagtaattatgt-tttatttat-atgcag-------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116415731|gb|EG458323.1|EG458323
EST:     TGGCCATGGCAATGGGGCAGTTAGGCACCCTCGAAGGATTCATACGCCAG                         GCTGATAACTTGAGGCTGCAAACACTACAACAGATGCTTTGAGTATTAACA
genomic: TGGCCATGGCAATGGGGCAGTTAGGCACCCTCGAAGGATTCATACGCCAGgtactttaga ... ttggtggcagGCTGATAACTTGAGGCTGCAAACACTACAACAGATGCTTCGAGTATTAACA