1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGAGTTTTCATCTCAAGTTCAGGAGACCAAGCTCATTCTACTGGTGGCAATGgtgggttgtttcttctctgttagttttgagattgatccttttgatttgaaatttctatgtgagataagtgcatatatacatatatgttgatgaattggtg...
species | Arabidopsis thaliana |
transcript | AT3G12250.5 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TTCTACTGGTGGCAATG GGGCTTTGGCATTTGATGCAGAACACTCACGATGGCTTGAAGAAAAGAACAEST: gi|86063162|gb|DR358919.1|DR358919
genomic: TTCTACTGGTGGCAATGgtgggttgtt ... ctttctgcagGGGCTTTGGCATTTGATGCAGAACACTCACGATGGCTTGAAGAAAAGAACA
EST: AGTTTTCATCTCAAGTTCAGGAGACCAATCTCATTCTACTGGTGGCAATG GGGCTTTGGCATTTGATGCAGAACACTCACGATGGCTTGAAGAAAAGAACAEST: gi|116415731|gb|EG458323.1|EG458323
genomic: AGTTTTCATCTCAAGTTCAGGAGACCAAGCTCATTCTACTGGTGGCAATGgtgggttgtt ... ctttctgcagGGGCTTTGGCATTTGATGCAGAACACTCACGATGGCTTGAAGAAAAGAACA
EST: AGTTTTCATCTCAAGTTCAGGAGACCAAGCTCATTCTACTGGTGGCAATG GGGCTTTGGCATTTGATGCAGAACACTCACGATGGCTTGAAGAAAAGAACA
genomic: AGTTTTCATCTCAAGTTCAGGAGACCAAGCTCATTCTACTGGTGGCAATGgtgggttgtt ... ctttctgcagGGGCTTTGGCATTTGATGCAGAACACTCACGATGGCTTGAAGAAAAGAACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGTTTTCATCTCAAGTTCAGGAGACCAAGCTCATTCTACTGGTGGCAATGgtgggttgtttcttctctgttagttttgagattgatccttttgatttgaaatttctatgtgagataagtgcatatatacatatatgttgatgaattggtg
- - - - - - - - - - AGGAGA
- - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - TGGTGG