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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGTATTCAACTTGCTTCCTAACTTGAACGTCAACGAGTTGGTTAAAGCCTTTGCAGgtttgctttttcttccttgaagttttatgttcgcacagggtttctctcatttgaactcttttttttttcctaactttattcattttgtacag

Basic information

species Arabidopsis thaliana
transcript AT3G11270.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86084913|gb|DR380672.1|DR380672
EST:     CAACTTGCTTCCTAACTTGAACGTCAACGAGTTGGTTAAAGCCTTTGCAG                         TAAAAACAAATGACATGATGCTCGTAATCTACCTTTCTTCGCTTATCCGAA
genomic: CAACTTGCTTCCTAACTTGAACGTCAACGAGTTGGTTAAAGCCTTTGCAGgtttgctttt ... ttttgtacagTAAAAACAAATGACATGATGCTCGTAATCTACCTTTCTTCGCTTATCCGAA
EST: gi|164142698|gb|ES022038.1|ES022038
EST:     GGTTAAAGCCTTTGCAG                         TAAAAACAAATGACATGATGCTCGTAATCTACCTTTCTTCGCTTATCCGAA
genomic: GGTTAAAGCCTTTGCAGgtttgctttt ... ttttgtacagTAAAAACAAATGACATGATGCTCGTAATCTACCTTTCTTCGCTTATCCGAA