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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtctacatggggaaacaaatcctttgatagtttgatttccttatttcagagcataagaatgatgagggaatttttttttttgtaaatgcttccgaggaaactcaatggagtccttcttgcttcgcttacgccagttggttggtcttgaacagGTGTGGAACATTTGCTCAGGGATGTAAAAGACACAACCATCAGTACCTTGGCAACTGAG

Basic information

species Arabidopsis thaliana
transcript AT3G11270.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86084913|gb|DR380672.1|DR380672
EST:     TTGCAGCTCATGAAGTTGAGGAAATTG                         G-GTGGAACATTTGCTCAGGGATGTAAAAGACACAACCATCAGTACCTTGG
genomic: TTGCAGCTCATGAAGTTGAGGAAATTGgtatgtctac ... tcttgaacagGTGTGGAACATTTGCTCAGGGATGTAAAAGACACAACCATCAGTACCTTGG
EST: gi|125285076|gb|EL299161.1|EL299161
EST:     TTTGGTACACGTGCCTACAGAAATTGCAGCTCATGAAGTTGAGGAAATTG                         GTGTGGAACATTTGCTCAGGGA
genomic: TTT-GTACACGTGCCTACAGAAATTGCAGCTCATGAAGTTGAGGAAATTGgtatgtctac ... tcttgaacagGTGTGGAACATTTGCTCAGGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaactcaatggagtccttcttgcttcgcttacgccagttggttggtcttgaacagGTGTGGAACATTTGCTCAGGGATGTAAAAGACACAACCATCAGTACCTTGGCAACTGAG
                         cgcttac  putative branch site (score: 3)