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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAGAAGGTAAAGGAAGAGTCTATGTGCATTGCTCAGCCGGATTGGGAAGAGCTCCAGGGGTTTCCATTGCTTATATGTATTGGTTCTGTGACATGAATgtaagtttaatagtctcactctacttcaatccaagaaagtttcatactttttttgcgttctgattctgtgtttcgaacag

Basic information

species Arabidopsis thaliana
transcript AT3G10940.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G10940.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA04G39890.1 (Glycine max), 5'ss of exon 3
TTCAGAAGGTAAAGGAAGAGTCTATGTGCATTGCTCAGCCGGATTGGGAAGAGCTCCAGGGGTTTCCATTGCTTATATGTATTGGTTCTGTGACATGAATgtaagtttaatagtctcactctac--ttcaatccaagaa--agtttcatacttttt--ttgcgttctgattctgtgtttcgaacag--------------------------------------------------------------------------------------------------
||| || || ||||||||||| |||||||||||  | || ||| | ||||||||||||| |||  | ||||||||| |||  ||||| |||||||||||||| |||   | |  |||||  |    || ||||||  ||  | || ||||||  ||  ||     |   |  | || || |||||                                                                                                   
TTCTGAGGGAAAAGGAAGAGTTTATGTGCATTGTACGGCTGGACTTGGAAGAGCTCCAGCGGTGGCAATTGCTTATTTGTTCTGGTTTTGTGACATGAATgtgagtccgaaaccctcaccttgtcgttgaatccagaaacaatttccatactacttaatttttcacaagtgttatggtt-gaacatcatcaacttggtggtgaattggtgatagattggttcacagatttcttaattgagatttcattttttcacaaatgaatgtggcatttttctttggacag

upper sequence: AT3G10940.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA06G15000.1 (Glycine max), 5'ss of exon 3
TTCAGAAGGTAAAGGAAGAGTCTATGTGCATTGCTCAGCCGGATTGGGAAGAGCTCCAGGGGTTTCCATTGCTTATATGTATTGGTTCTGTGACATGAATgtaagtttaatagtctcactcta--cttcaatccaagaaagtttcatacttttttt----gcgttctgattctgtgtttcgaacag--------------
||| || || ||||||||||| ||||| |||||  |||| ||| | ||||||||||||| ||   | ||||||||| |||  ||||| |||||||||||||| |||   | |  |||||  ||   || ||||||  ||    |  |  |||| ||      |  |  ||  |   | |      |              
TTCTGAGGGAAAAGGAAGAGTTTATGTACATTGTACAGCTGGACTTGGAAGAGCTCCAGCGGCGGCAATTGCTTATTTGTTCTGGTTTTGTGACATGAATgtgagtcctaaaccctcaccttatctttgaatccagaaacaacttctgtttttctttttgatgggcaaatgttaattgttagtttgttagttttttgtta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47829087|gb|CK118771.1|CK118771
EST:     GAGCTCCAGGGGTTTCCATTGCTTATATGTATTGGTTCTGTGACATGAAT                         CTTAACACGGCTTATGACACTTTGGTATCAAAGCGTCCATGTGGGCCTAAC
genomic: GAGCTCCAGGGGTTTCCATTGCTTATATGTATTGGTTCTGTGACATGAATgtaagtttaa ... tttcgaacagCTTAACACGGCTTATGACACTTTGGTATCAAAGCGTCCATGTGGGCCTAAC
EST: gi|86074744|gb|DR370501.1|DR370501
EST:     GAGCTCCAGGGGTTTCCATTGCTTATATGTATTGGTTCTGTGACATGAAT                         CTTAACACGGCTTATGACACTTTGGTATCAAAGCGTCCATGTGGGCCTAAC
genomic: GAGCTCCAGGGGTTTCCATTGCTTATATGTATTGGTTCTGTGACATGAATgtaagtttaa ... tttcgaacagCTTAACACGGCTTATGACACTTTGGTATCAAAGCGTCCATGTGGGCCTAAC