1 5' 3' | 2 5' 3' | 3 5' 3' |
gtatttacaatatctaaaaattgatagctgtgttacatggatttagtgtttcatatggatccaaggttctgtgttgtgatgtttcttatatttttggtctttgttttgttttctcagGTATGAACTATACATTGATAAGAGATGAACTTATAGTTGGGTCACAGCCACAGAAACCTGAGGACATAGATCACTTGAAGCAGGAACAGAATGTTGCTTA
species | Arabidopsis thaliana |
transcript | AT3G10940.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGCTATGAAGAGATTGATGAGAAGCCCTTATGAATATCATCATGATCTAG GTATGAACTATACATTGATAAGAGATGAACTTATAGTTGGGTCACAGCCACEST: gi|125056154|gb|EL126002.1|EL126002
genomic: AGCTATGAAGAGATTGATGAGAAGCCCTTATGAATATCATCATGATCTAGgtatttacaa ... gttttctcagGTATGAACTATACATTGATAAGAGATGAACTTATAGTTGGGTCACAGCCAC
EST: CTATGAAGAGATTGATGAGAAGCCCTTATGAATATCATCATGATCTAG GTATGAACTATACATTGATAAGAGATGAACTTATAGTTGG
genomic: CTATGAAGAGATTGATGAGAAGCCCTTATGAATATCATCATGATCTAGgtatttacaa ... gttttctcagGTATGAACTATACATTGATAAGAGATGAACTTATAGTTGG
aaggttctgtgttgtgatgtttcttatatttttggtctttgttttgttttctcagGTATGAACTATACATTGATAAGAGATGAACTTATAGTTGGGTCACAGCCACAGAAACCTGAGGACATAGATCACTTGAAGCAGGAACAGAATGTTGCTTA
tctttgttttgttttc CT-rich tract
atgtttcttatatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttacaatatctaaaaattgatagctgtgttacatggatttagtgtttcatatggatccaaggttctgtgttgtgatgtttcttatatttttggtctttgttttgttttctcagGTATGAACTATACATTGATAAGAGATGAACTTATAGTTGGGTCACAGCCACAGAAACCTGAGGACATAGATCACTTGAAGCAGGAACAGAATGTTGCTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC