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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTCACGATTTGACCATCGTCCGCACTTGGGGGTTCCGCGATGGCGGCTACCGCGCTCTCCAAATTGCCCCTGGTGTCTACGATGAAAAAACTTTTCAGgtaagtaggtctttaatatagagagaaacagctcaaaaatgtatgttttatattgataatgaattagtttgtcttaactcttaaatttttccgggtggaaattaaag

Basic information

species Arabidopsis thaliana
transcript AT3G10890.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163983009|gb|ES103045.1|ES103045
EST:     CCGCGCTCTCCAAATTGCCCCTGGTGTCTACGATG-AAAAACTTTTCAG                         GGTTTGGATTTTGCGATAGCGGAAGCAAAAAGACTCGGTATAAAAATAATA
genomic: CCGCGCTCTCCAAATTGCCCCTGGTGTCTACGATGAAAAAACTTTTCAGgtaagtaggt ... gaaattaaagGGTTTGGATTTTGCGATAGCGGAAGCAAAAAGACTCGGTATAAAAATGATA
EST: gi|164043015|gb|ES121011.1|ES121011
EST:     ACCGCGCTCTCCAAATTGCCCCTGGTGTCTACGATGAAAAAACTTTTCAG                         GGTTTGGATTTTGCGATAGCGGAAGCAAAAAG
genomic: ACCGCGCTCTCCAAATTGCCCCTGGTGTCTACGATGAAAAAACTTTTCAGgtaagtaggt ... gaaattaaagGGTTTGGATTTTGCGATAGCGGAAGCAAAAAG