1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagtaggtctttaatatagagagaaacagctcaaaaatgtatgttttatattgataatgaattagtttgtcttaactcttaaatttttccgggtggaaattaaagGGTTTGGATTTTGCGATAGCGGAAGCAAAAAGACTCGGTATAAAAATGATAATCACCTTTGTCAATAACTATTCTGACTTTGGAGGGAGGAAACAATACG
species | Arabidopsis thaliana |
transcript | AT3G10890.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGCGCTCTCCAAATTGCCCCTGGTGTCTACGATG-AAAAACTTTTCAG GGTTTGGATTTTGCGATAGCGGAAGCAAAAAGACTCGGTATAAAAATAATAEST: gi|164043015|gb|ES121011.1|ES121011
genomic: CCGCGCTCTCCAAATTGCCCCTGGTGTCTACGATGAAAAAACTTTTCAGgtaagtaggt ... gaaattaaagGGTTTGGATTTTGCGATAGCGGAAGCAAAAAGACTCGGTATAAAAATGATA
EST: ACCGCGCTCTCCAAATTGCCCCTGGTGTCTACGATGAAAAAACTTTTCAG GGTTTGGATTTTGCGATAGCGGAAGCAAAAAG
genomic: ACCGCGCTCTCCAAATTGCCCCTGGTGTCTACGATGAAAAAACTTTTCAGgtaagtaggt ... gaaattaaagGGTTTGGATTTTGCGATAGCGGAAGCAAAAAG
ttgataatgaattagtttgtcttaactcttaaatttttccgggtggaaattaaagGGTTTGGATTTTGCGATAGCGGAAGCAAAAAGACTCGGTATAAAAATGATAATCACCTTTGTCAATAACTATTCTGACTTTGGAGGGAGGAAACAATACG
tcttaac putative branch site (score: 2)
ttaactcttaaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtaggtctttaatatagagagaaacagctcaaaaatgtatgttttatattgataatgaattagtttgtcttaactcttaaatttttccgggtggaaattaaagGGTTTGGATTTTGCGATAGCGGAAGCAAAAAGACTCGGTATAAAAATGATAATCACCTTTGTCAATAACTATTCTGACTTTGGAGGGAGGAAACAATACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA