Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatttctcatgtaaagccatgagctatcgactcgagtagctcacttcaatgtcacttgacaacatgactggctgaaatagttggttactctttgcagTATACAGTGTTTGATCAGCTGAAACAGCACCTTCTTAAGCAGAAAAATGCAAAAGCCGAGAATGGTTCTTCTCCGGTAGTGCTCTCTGCCTTTATGGCGT

Basic information

species Arabidopsis thaliana
transcript AT3G05290.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|301501272|gb|HO206812.1|HO206812
EST:     TTGATGGCCTAGGGATCTCTCTTTTATTGACTTCAAATCCTGCAATTCAG                         TATACAGTGTTTGATCAGCTGAAACAGCACCTTCTTAAGCAGAGAAATGCA
genomic: TTGATGGCCTAGGGATCTCTCTTTTATTGACTTCAAATCCTGCAATTCAGgtacatttct ... ctctttgcagTATACAGTGTTTGATCAGCTGAAACAGCACCTTCTTAAGCAGAAAAATGCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttcaatgtcacttgacaacatgactggctgaaatagttggttactctttgcagTATACAGTGTTTGATCAGCTGAAACAGCACCTTCTTAAGCAGAAAAATGCAAAAGCCGAGAATGGTTCTTCTCCGGTAGTGCTCTCTGCCTTTATGGCGT
                                          ttactcttt  CT-rich tract
                                aaatagtt  TA-rich tract