Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttctttatcctttgatttgggtgcatcggtttctatagatagtgtcggtctcctctcgtgttttttttgtaatggtttttttttttgggtgatatttgcagATATCTTTCCGATGTTATGTGGGAGGCAATTTCTAAAGGACAAGTCTTTTCACTGTATCAAGGCCTTGGAACTAAGAATTTTCAGTCTTTCATTTCTCAG

Basic information

species Arabidopsis thaliana
transcript AT3G05290.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86031624|gb|DR327377.1|DR327377
EST:     AAATCAAAGTTCCAAGCCGAGGTTCGAGCTCGTGGTCAGCAAAAATACAG                         ATATCTTTVCGATGTTATGTGGGAGGCAATTTCTAAAGGACATGTCTTTAT
genomic: AAATCAAAGTTCCAAGCCGAGGTTCGAGCTCGTGGTCAGCAAAAATACAGgtttctttat ... atatttgcagATATCTTTCCGATGTTATGTGGGAGGCAATTTCTAAAGGACAAGTCTTT-T
EST: gi|47830192|gb|CK119876.1|CK119876
EST:     AAATCAAAGTTCCAAGCCGAGGTTCGAGCTCGTGGTCAGCAAAAATACAG                         ATATCTTTCCGATGTTATGTGGGAGGCAATTTCTAAAGGACAAGTCTTTTC
genomic: AAATCAAAGTTCCAAGCCGAGGTTCGAGCTCGTGGTCAGCAAAAATACAGgtttctttat ... atatttgcagATATCTTTCCGATGTTATGTGGGAGGCAATTTCTAAAGGACAAGTCTTTTC
EST: gi|86031629|gb|DR327382.1|DR327382
EST:     AAATCAAAGTTCCAAGCCGAGGTTCGAGCTCGTGGTCAGCAAAAATACAG                         ATATCTTTMCGATGTTATGTGGGAGGCAATTTCTAAAGGACATGTCTTTTC
genomic: AAATCAAAGTTCCAAGCCGAGGTTCGAGCTCGTGGTCAGCAAAAATACAGgtttctttat ... atatttgcagATATCTTTCCGATGTTATGTGGGAGGCAATTTCTAAAGGACAAGTCTTTTC
EST: gi|86031626|gb|DR327379.1|DR327379
EST:     AAATCAAAGTTCCAAGCCGAGGTTCGAGCTCGTGGTCAGCAAAAATACAG                         ATATCTTTCCGATGTTATGTGGGAGGCAATTTCTAAAGGACATGTCTTTTC
genomic: AAATCAAAGTTCCAAGCCGAGGTTCGAGCTCGTGGTCAGCAAAAATACAGgtttctttat ... atatttgcagATATCTTTCCGATGTTATGTGGGAGGCAATTTCTAAAGGACAAGTCTTTTC
EST: gi|86031625|gb|DR327378.1|DR327378
EST:     AAATCAAAGTTCCAAGCCGAGGTTCGAGCTCGTGGTCAGCAAAAATACAG                         ATATCTTTCCGATGTTATGTGGGAGGCAATTTCTAAAGGACATGTCTTTTC
genomic: AAATCAAAGTTCCAAGCCGAGGTTCGAGCTCGTGGTCAGCAAAAATACAGgtttctttat ... atatttgcagATATCTTTCCGATGTTATGTGGGAGGCAATTTCTAAAGGACAAGTCTTTTC
EST: gi|301501272|gb|HO206812.1|HO206812
EST:     AAATCAAAGTTCCAAGCCGAGGTTCGAGCTCGTGGTCAGCAAAAATACAG                         ATATCTTTCCGATGTTATGTGGGAGGCAATTTCTAAAGGACAAGTCTTTTC
genomic: AAATCAAAGTTCCAAGCCGAGGTTCGAGCTCGTGGTCAGCAAAAATACAGgtttctttat ... atatttgcagATATCTTTCCGATGTTATGTGGGAGGCAATTTCTAAAGGACAAGTCTTTTC
EST: gi|86031627|gb|DR327380.1|DR327380
EST:     AAATCAAAGTTCCAAGCCGAGGTTCGAGCTCGTGGTCAGCAAAAATACAG                         ATATCTTTCCGATGTTATGTGGGAGGCAATTTCTAAAGGACATGTCTTTTC
genomic: AAATCAAAGTTCCAAGCCGAGGTTCGAGCTCGTGGTCAGCAAAAATACAGgtttctttat ... atatttgcagATATCTTTCCGATGTTATGTGGGAGGCAATTTCTAAAGGACAAGTCTTTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtctcctctcgtgttttttttgtaatggtttttttttttgggtgatatttgcagATATCTTTCCGATGTTATGTGGGAGGCAATTTCTAAAGGACAAGTCTTTTCACTGTATCAAGGCCTTGGAACTAAGAATTTTCAGTCTTTCATTTCTCAG
            tgttttttttgtaatg  TA-rich tract