Sequence
atgc intronic sequence ATGC exonic sequenceAAGATTCTTACGGAGAGGCTCTCTGCAGCTCTTTTAAATGTCAGTTTAAAAGAAGATCTTGCTAAACAGCATGCTAAAGTTGCAGAGGAAGCTGTCTCAGgttagttcttgtgtcttgtcacattttctttttgtagcagaaaccgaatttagttcttggttaataaacgaatgtacatctag
Basic information
species | Arabidopsis thaliana |
transcript | AT3G05270.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G05270.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA05G32920.1 (Glycine max), 5'ss of exon 3
AAGATTCTTACGGAGAGGCTCTCTGCAGCTCTTTTAAATGTCAGTTTAAAAGAAGATCTTGCTAAACAGCATGCTAAAGTTGCAGAGGAAGCTGTCTCAGgt---tagttcttgtgtcttgtcacattttctttttgtagcag----aaaccgaatttagttcttggttaataaacg-aatgtacatctag---------
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AAAATTATTACAGACAAATTAGCTACTGCTCTGCTGACAATTAGTGCAAAAGAAGACTTAGTAAAGCAGCATTCTAAAGTTGCAGAAGAAGCTGTCTCAGgtatttattgattggtcctttccatgcatgtcactgaaagtattgctacctcaaatatttaccgtcactaaaaaatgtggggtgcattcaaccccaaaag
upper sequence: AT3G05270.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA06G16560.1 (Glycine max), 5'ss of exon 2
AAGATTCTTACGGAGAGGCTCTCTGCAGCTCTTTTAAATGTCAGTTTAAAAGAAGATCTTGCTAAACAGCATGCTAAAGTTGCAGAGGAAGCTGTCTCAGgttagttcttgtgtcttgtcacattttctttttgtagcagaaaccgaatttagttcttg-gttaat--aaacgaatgtacatctag-----------------
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AAGACTCTAACAGAAAGATTATCTGCTGCTCTCTTAAACTCTCGTGCCAAAGAAGACTTGGCAAAGCAGCATGCTAAAGTTGCGGAAGAAGCTGTCTCAGgta---tctgttgtttggtcatcttgcacatcaataacttctccttgatttgacaattaagtttatctaaatgagaaaccattgaggcattgaacagttgcaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116428338|gb|EG470930.1|EG470930EST: AGAAGATCTTGCTAAACAGCATGCTAAAGTTGCAGAGGAAGCTGTCTCAG GTTGGGAAAAGGCAGAGAACGAAGCTGCGGCTCTGAAGCAACAGCTTGATG
genomic: AGAAGATCTTGCTAAACAGCATGCTAAAGTTGCAGAGGAAGCTGTCTCAGgttagttctt ... gtacatctagGTTGGGAAAAGGCAGAGAACGAAGCTGCGGCTCTGAAGCAACAGCTTGATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAGATTCTTACGGAGAGGCTCTCTGCAGCTCTTTTAAATGTCAGTTTAAAAGAAGATCTTGCTAAACAGCATGCTAAAGTTGCAGAGGAAGCTGTCTCAGgttagttcttgtgtcttgtcacattttctttttgtagcagaaaccgaatttagttcttggttaataaacgaatgtacatctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG