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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCTGGTTATGGCGGAGAAAGTCATCTGAGAAAAGTCCCGGCGAAACTGAGAGTACTGGCTCTGTCTCTTCTCACTCTGAAAGATTCTCTGACGATCAGgttacacttttttgcaatgcctttgtgacattatgtgattgtggtgaaatcttggaattaatcattttgattgtgttatttggttttgtaatttgtgtgtgaaacttcag

Basic information

species Arabidopsis thaliana
transcript AT3G05270.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G05270.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA06G16560.1 (Glycine max), 5'ss of exon 1
GAGCTGGTTATGGCGGAGAAAGTCATCTGAGAAAAGTCCCGGCGAAACTGAGAGTACTGGCTCTGTCTCTTCTCACTCTGAAAGATTCTCTGACGATCAGgttacacttttttgcaatgcctttgtgacattatgtgattgtggtgaaatcttggaattaatcattttgattgtgttatttggttttgtaatttgtgtgtgaaacttcag
||| |||  |||||| || ||||| ||||||||||||||||| |||||||||||| |||||||  | || ||||| ||||||||||| | ||| ||||||||  | | |||||    ||| |     |       ||    |  |  |    |  |  |||  ||    ||         |   |   ||  |||   |||||       
GAGTTGGCCATGGCGCAGGAAGTCGTCTGAGAAAAGTCCCGGTGAAACTGAGAGTTCTGGCTCAATGTCATCTCATTCTGAAAGATTTTTTGATGATCAGgtaccgccttttta-gttgcatacacaatgagggatgcacataatttagatatttagataactatc---atcaaacctaataaataactagattgaaagtgaat------

upper sequence: AT3G05270.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA08G00550.1 (Glycine max), 5'ss of exon 1
GAGCTGGTTATGGCGGAGAAAGTCATCTGAGAAAAGTCCCGGCGAAACTGAGAGTACTGGCTCTGTCTCTTCTCACTCTGAAAGATTCTCTGACGATCAGgttacacttttttgcaatgcctttgtgacatta-tgtgattgtggtgaaatcttggaattaatcattttgattgtgttatttggttttgtaatttgtgtgtgaaacttcag
||| ||| | ||||| || ||||||||||||||||||||||| ||||| |||||| |||| ||  | || ||||  || |||||||||||||| || |||||         ||| |||      |||  || | |||| ||    ||| |   |    ||   |||||||| ||      ||| || |||  ||| |  |   ||  ||| 
GAGTTGGCTTTGGCGCAGGAAGTCATCTGAGAAAAGTCCCGGTGAAACGGAGAGTTCTGGTTCAATATCATCTCTTTCAGAAAGATTCTCTGATGAACAGgtggg----cattggaatagaa--gtggtatcagtgtgttttaattgacaatgt----tttgccattttgaatgcacagattg-ttatgtgctttttaggcttaatgtcac

upper sequence: AT3G05270.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA05G32920.1 (Glycine max), 5'ss of exon 2
GAGCTGGTTATGGCGGAGAAAGTCATCTGAGAAAAGTCCCGGCGAAACTGAGAGTACTGGCTCTGTCTCTTCTCACTCTGAAAGATTCTCTGACGATCAGgttacacttttttgcaatgcctttgtgacatta-tgtgattgtggtgaaatcttggaattaatcattttgattgtgttatttggttttgtaatttgtgtgtgaaacttcag
||| ||| | ||||| || |||||||||||||||||||| || ||||| |||||| |||| ||  | || ||||  || |||||||||||||| || |||||         ||| ||||     |||  || | |||| ||    |||||   |    || | |||||||||||      ||| || |||  ||| |  |   ||   || 
GAGTTGGCTTTGGCGCAGGAAGTCATCTGAGAAAAGTCCAGGTGAAACAGAGAGTTCTGGTTCAATTTCATCTCTTTCAGAAAGATTCTCTGATGAACAGgtggg----cattggaatggaa--gtggtatcagtgtgtttaaattgaaagtgt----tttaccattttgattgcacagattg-ttatgtgctttttaggcttaataacac

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116428338|gb|EG470930.1|EG470930
EST:     AGAGTACTGGCTCTGTCTCTTCTCACTCTGAAAGATTCTCTGACGATCAG                         AGATCTCAATCACCGGAATTAAACTCTAAACCGGTAACACGAGAAGAAGAG
genomic: AGAGTACTGGCTCTGTCTCTTCTCACTCTGAAAGATTCTCTGACGATCAGgttacacttt ... gaaacttcagAGATCTCAATCACCGGAATTAAACTCTAAACCGGTAACACGAGAAGAAGAG