1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CAACAATTATTATCTAATTCCGTTTTCAGCTCGTTCTCGCCAATACGCGTTACCAGACTACGTTGTGTATCTCATTTCCGAATACGGAAAGATTCTCAGAgtaagtttaaaaaattatatattgtcttctttttaacgtatatatactaaatttgtacatatgtcatgtaacaaattgggggcttaccacgaaataacct...
species | Arabidopsis thaliana |
transcript | AT3G04290.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TACCAGACTACGTTGTGTATCTCATTTCCGAATACGGAAAGATTCTCAGA AAACTCTACGAACTEST: gi|86020702|gb|DR316448.1|DR316448
genomic: TACCAGACTACGTTGTGTATCTCATTTCCGAATACGGAAAGATTCTCAGAgtaagtttaa ... attgaaatagAAACTCTACGAACT
EST: TACCAGACTACGTTGTGTATCTCATTTCCGAATACGGAAAGATTCTCAGA AAACTCTACGAACTGGGTGCAAGACGAGTTTTEST: gi|124753534|gb|EH843664.1|EH843664
genomic: TACCAGACTACGTTGTGTATCTCATTTCCGAATACGGAAAGATTCTCAGAgtaagtttaa ... attgaaatagAAACTCTACGAACTGGGTGCAAGACGAGTTTT
EST: TACCAGACTACGTTGTGTATCTCATTTCCGAATACGGAAAGATTCTCAGA AAACTCTACGAACEST: gi|47831098|gb|CK120782.1|CK120782
genomic: TACCAGACTACGTTGTGTATCTCATTTCCGAATACGGAAAGATTCTCAGAgtaagtttaa ... attgaaatagAAACTCTACGAAC
EST: TACCAGACTACGTTGTGTATCTCATTTCCGAATACGGAAAGATTCTCAGA AAACTCTACGAACTGGGTGCAAGACGAGTTTTGGTAACTGGAACTGGTGCAEST: gi|124837866|gb|EH922305.1|EH922305
genomic: TACCAGACTACGTTGTGTATCTCATTTCCGAATACGGAAAGATTCTCAGAgtaagtttaa ... attgaaatagAAACTCTACGAACTGGGTGCAAGACGAGTTTTGGTAACTGGAACTGGTGCA
EST: CATTTCCGAATACGGAAAGATTCTCAGA AAACTCTACGAACTGGGTGCAAGACGAGTTTTGGTAACTGGAACTGGTGCAEST: gi|124902138|gb|EH976218.1|EH976218
genomic: CATTTCCGAATACGGAAAGATTCTCAGAgtaagtttaa ... attgaaatagAAACTCTACGAACTGGGTGCAAGACGAGTTTTGGTAACTGGAACTGGTGCA
EST: TACCAGACTACGTTGTGTATCTCATTTCCGAATACGGAAAGATTCTCAGA AAACTCTACGAACTGGGTGCAAGACGAGTTTTGGTAACTGGAAEST: gi|163989646|gb|ES174584.1|ES174584
genomic: TACCAGACTACGTTGTGTATCTCATTTCCGAATACGGAAAGATTCTCAGAgtaagtttaa ... attgaaatagAAACTCTACGAACTGGGTGCAAGACGAGTTTTGGTAACTGGAA
EST: TGTATCTCATTTCCGAATACGGAAAGATTCTCAGT AAACTCTACGAACTGGGTGCAAGACGAGTTTTGGTAACTGGAACTGGTGCAEST: gi|86020684|gb|DR316430.1|DR316430
genomic: TGTATCTCATTTCCGAATACGGAAAGATTCTCAGAgtaagtttaa ... attgaaatagAAACTCTACGAACTGGGTGCAAGACGAGTTTTGGTAACTGGAACTGGTGCA
EST: TACCAGACTACGTTGTGTATCTCATTTCCGAATACGGAAAGATTCTCAGA AAACTCTACGAACTGGGTGCAAGACGAGTTTTGGTAACTGGAACTGGTGCAEST: gi|86020690|gb|DR316436.1|DR316436
genomic: TACCAGACTACGTTGTGTATCTCATTTCCGAATACGGAAAGATTCTCAGAgtaagtttaa ... attgaaatagAAACTCTACGAACTGGGTGCAAGACGAGTTTTGGTAACTGGAACTGGTGCA
EST: TACCAGACTACGTTGTGTATCTCATTTCCGAATACGGAAAGATTCTCAGA AAACTCTACGAAEST: gi|125139341|gb|EL178164.1|EL178164
genomic: TACCAGACTACGTTGTGTATCTCATTTCCGAATACGGAAAGATTCTCAGAgtaagtttaa ... attgaaatagAAACTCTACGAA
EST: TACCAGACTACGTTGTGTATCTCATTTCCGAATACGGAAAGATTCTCAGA AAACTCTACGAACTGGGTGEST: gi|47832310|gb|CK121994.1|CK121994
genomic: TACCAGACTACGTTGTGTATCTCATTTCCGAATACGGAAAGATTCTCAGAgtaagtttaa ... attgaaatagAAACTCTACGAACTGGGTG
EST: TACCAGACTACGTTGTGTATCTCATTTCCGAATACGGAAAGATTCTCAGA AAACTCTACGAACTGGGTGCAAGACGAGTTTTGGTAACTGGAACTGGTGCAEST: gi|86020693|gb|DR316439.1|DR316439
genomic: TACCAGACTACGTTGTGTATCTCATTTCCGAATACGGAAAGATTCTCAGAgtaagtttaa ... attgaaatagAAACTCTACGAACTGGGTGCAAGACGAGTTTTGGTAACTGGAACTGGTGCA
EST: TACCAGACTACGTTGTGTATCTCATTTCCGAATACGGAAAGATTCTCAGA AAACTCTACGAACTGGGTGCAAGACGAGTTTTGEST: gi|124835799|gb|EH920238.1|EH920238
genomic: TACCAGACTACGTTGTGTATCTCATTTCCGAATACGGAAAGATTCTCAGAgtaagtttaa ... attgaaatagAAACTCTACGAACTGGGTGCAAGACGAGTTTTG
EST: TACCAGACTACGTTGTGTATCTCATTTCCGAATACGGAAAGATTCTCAGA AAACTCTACGAACTGGGTGCAAGACGAGTTTTGGTAACTGGAACT
genomic: TACCAGACTACGTTGTGTATCTCATTTCCGAATACGGAAAGATTCTCAGAgtaagtttaa ... attgaaatagAAACTCTACGAACTGGGTGCAAGACGAGTTTTGGTAACTGGAACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAACAATTATTATCTAATTCCGTTTTCAGCTCGTTCTCGCCAATACGCGTTACCAGACTACGTTGTGTATCTCATTTCCGAATACGGAAAGATTCTCAGAgtaagtttaaaaaattatatattgtcttctttttaacgtatatatactaaatttgtacatatgtcatgtaacaaattgggggcttaccacgaaataacct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaataac