1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtacgtactcaactaattttcctatttgaacatatataggcttcttttggtctggtattgaatgttctaatatagtaatgtggtgttgttaatgcagCTTGGTGTTGAGACCGTCCCTGTACTTGTTGGCCCTGTCTCTTACTTGCTTCTTTCCAAGCTTGCTAAGGGTGTTGACAAGTCATTTGATCTTCTCTCCC
species | Arabidopsis thaliana |
transcript | AT3G03780.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTTCTTACGCATCTCACAAGGCTGTCAATGAGTACAAGGAGGCCAAGGCT CTTGGTGTTGAGACCGTCCCTGTAACTTGTTGGCCCTGTCTCTTACTTGCTEST: gi|86057390|gb|DR353147.1|DR353147
genomic: TTTCTTACGCATCTCACAAGGCTGTCAATGAGTACAAGGAGGCCAAGGCTgtacgtactc ... gttaatgcagCTTGGTGTTGAGACCGTCCCTGTA-CTTGTTGGCCCTGTCTCTTACTTGCT
EST: GGCTGTCAATGAGTACAAGGAGGCCAAGGCT CTTGGTGTTGAGACCGTCCCTGTACTTGTTGGCCCTGTCTCTTACTTGCTTEST: gi|116471261|gb|EG513853.1|EG513853
genomic: GGCTGTCAATGAGTACAAGGAGGCCAAGGCTgtacgtactc ... gttaatgcagCTTGGTGTTGAGACCGTCCCTGTACTTGTTGGCCCTGTCTCTTACTTGCTT
EST: TTTCTTACGCATCTCACAAGGCTGTCAATGAGTACAAGGAGGCCAAGGCT CTTGGTGTTGAGACCGTCCCTGTACTTGTTGGCCCTGTCTCTTACTTGCTT
genomic: TTTCTTACGCATCTCACAAGGCTGTCAATGAGTACAAGGAGGCCAAGGCTgtacgtactc ... gttaatgcagCTTGGTGTTGAGACCGTCCCTGTACTTGTTGGCCCTGTCTCTTACTTGCTT
tcttttggtctggtattgaatgttctaatatagtaatgtggtgttgttaatgcagCTTGGTGTTGAGACCGTCCCTGTACTTGTTGGCCCTGTCTCTTACTTGCTTCTTTCCAAGCTTGCTAAGGGTGTTGACAAGTCATTTGATCTTCTCTCCC
ttctaatatagtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtactcaactaattttcctatttgaacatatataggcttcttttggtctggtattgaatgttctaatatagtaatgtggtgttgttaatgcagCTTGGTGTTGAGACCGTCCCTGTACTTGTTGGCCCTGTCTCTTACTTGCTTCTTTCCAAGCTTGCTAAGGGTGTTGACAAGTCATTTGATCTTCTCTCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT