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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAACATTTGTCTCTTGAAATCGATCGCCGTTTTTCTCCATCCTCCGTTCATAATTCCGGCACCGTTTATCCAAAATCTACACTTGGCTGAAAACATGAGgtagctgttcgatttctaggtttttttgaaaaagtataatctcgaattcgatttgtgtgtatgtttgcttaactcacaaaaaggttttgcgtgatttgtg...

Basic information

species Arabidopsis thaliana
transcript AT3G03773.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116378930|gb|EG421522.1|EG421522
EST:     ATAATTCCGGCACCGTTTATCCAAAATCTACACTTGGCTGAAAACATGAG                         TCGTAATCCGGAGGTTCTTTGGGCTCAGCGTTCTGATAAAGTTTACCTAAC
genomic: ATAATTCCGGCACCGTTTATCCAAAATCTACACTTGGCTGAAAACATGAGgtagctgttc ... ttgtgtgcagTCGTAATCCGGAGGTTCTTTGGGCTCAGCGTTCTGATAAAGTTTACCTAAC
EST: gi|116376158|gb|EG418750.1|EG418750
EST:     ATAATTCCGGCACCGTTTATCCAAAATCTACACTTGGCTGAAAACATGAG                         TCGTAATCCGGAGGTTCTTTGGGCTCAGCGTTCTGATAAAGTTTACCTAAC
genomic: ATAATTCCGGCACCGTTTATCCAAAATCTACACTTGGCTGAAAACATGAGgtagctgttc ... ttgtgtgcagTCGTAATCCGGAGGTTCTTTGGGCTCAGCGTTCTGATAAAGTTTACCTAAC
EST: gi|116378931|gb|EG421523.1|EG421523
EST:     ATAATTCCGGCACCGTTTATCCAAAATCTACACTTGGCTGAAAACATGAG                         TCGTAATCCGGAGGTTCTTTGGGCTCAGCGTTCTGATAAAGTTTACCTAAC
genomic: ATAATTCCGGCACCGTTTATCCAAAATCTACACTTGGCTGAAAACATGAGgtagctgttc ... ttgtgtgcagTCGTAATCCGGAGGTTCTTTGGGCTCAGCGTTCTGATAAAGTTTACCTAAC
EST: gi|116378929|gb|EG421521.1|EG421521
EST:     CAAAATCTACACTTGGCTGAAAACATGAG                         TCGTAATCCGGAGGTTCTTTGGGCTCAGCGTTCTGATAAAGTTTACCTAAC
genomic: CAAAATCTACACTTGGCTGAAAACATGAGgtagctgttc ... ttgtgtgcagTCGTAATCCGGAGGTTCTTTGGGCTCAGCGTTCTGATAAAGTTTACCTAAC
EST: gi|116376157|gb|EG418749.1|EG418749
EST:     ATAATTCCGGCACCGTTTATCCAAAATCTACACTTGGCTGAAAACATGAG                         TCGTAATCCGGAGGTTCTTTGGGCTCAGCGTTCTGATAAAGTTTACCTAAC
genomic: ATAATTCCGGCACCGTTTATCCAAAATCTACACTTGGCTGAAAACATGAGgtagctgttc ... ttgtgtgcagTCGTAATCCGGAGGTTCTTTGGGCTCAGCGTTCTGATAAAGTTTACCTAAC
EST: gi|116376168|gb|EG418760.1|EG418760
EST:     CAAAATCTACACTTGGCTGAAAACATGAG                         TCGTAATCCGGAGGTTCTTTGGGCTCAGCGTTCTGATAAAGTTTACCTAAC
genomic: CAAAATCTACACTTGGCTGAAAACATGAGgtagctgttc ... ttgtgtgcagTCGTAATCCGGAGGTTCTTTGGGCTCAGCGTTCTGATAAAGTTTACCTAAC
EST: gi|116378927|gb|EG421519.1|EG421519
EST:     CAAAATCTACACTTGGCTGAAAACATGAG                         TCGTAATCCGGAGGTTCTTTGGGCTCAGCGTTCTGATAAAGTTTACCTAAC
genomic: CAAAATCTACACTTGGCTGAAAACATGAGgtagctgttc ... ttgtgtgcagTCGTAATCCGGAGGTTCTTTGGGCTCAGCGTTCTGATAAAGTTTACCTAAC
EST: gi|116378926|gb|EG421518.1|EG421518
EST:     CAAAATCTACACTTGGCTGAAAACATGAG                         TCGTAATCCGGAGGTTCTTTGGGCTCAGCGTTCTGATAAAGTTTACCTAAC
genomic: CAAAATCTACACTTGGCTGAAAACATGAGgtagctgttc ... ttgtgtgcagTCGTAATCCGGAGGTTCTTTGGGCTCAGCGTTCTGATAAAGTTTACCTAAC
EST: gi|116376170|gb|EG418762.1|EG418762
EST:     ATAATTCCGGCACCGTTTATCCAAAATCTACACTTGGCTGAAAACATGAG                         TCGTAATCCGGAGGTTCTTTGGGCTCAGCGTTCTGATAAAGTTTACCTAAC
genomic: ATAATTCCGGCACCGTTTATCCAAAATCTACACTTGGCTGAAAACATGAGgtagctgttc ... ttgtgtgcagTCGTAATCCGGAGGTTCTTTGGGCTCAGCGTTCTGATAAAGTTTACCTAAC
EST: gi|116376169|gb|EG418761.1|EG418761
EST:     ATAATTCCGGCACCGTTTATCCAAAATCTACACTTGGCTGAAAACATGAG                         TCGTAATCCGGAGGTTCTTTGGGCTCAGCGTTCTGATAAAGTTTACCTAAC
genomic: ATAATTCCGGCACCGTTTATCCAAAATCTACACTTGGCTGAAAACATGAGgtagctgttc ... ttgtgtgcagTCGTAATCCGGAGGTTCTTTGGGCTCAGCGTTCTGATAAAGTTTACCTAAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCAACATTTGTCTCTTGAAATCGATCGCCGTTTTTCTCCATCCTCCGTTCATAATTCCGGCACCGTTTATCCAAAATCTACACTTGGCTGAAAACATGAGgtagctgttcgatttctaggtttttttgaaaaagtataatctcgaattcgatttgtgtgtatgtttgcttaactcacaaaaaggttttgcgtgatttgtg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaaaaa