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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAATCGATGGATTTCAGATTATTGGAGATGCTATACCTGGAGAAAAAGTTCTTGGTTGTGGGTTTCCAGTGCGAGGAACCACTCTCTGTATGTTTCAGgtataatctttgtaaatcttttggtagtaagagtttttgaaaacaaacttagtggatgaaaaattttaaaaaattcccggtttgttgtttcttcttgaaaag

Basic information

species Arabidopsis thaliana
transcript AT3G03560.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G03560.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA03G23290.1 (Glycine max), 5'ss of exon 2
TGGAATCGATGGATTTCAGATTATTGGAGATGCTATACCTGGAGAAAAAGTTCTTGGTTGTGGGTTTCCAGTGCGAGGAACCACTCTCTGTATGTTTCAGgtataatctttgtaaatcttttggtagtaagagtttttgaaaacaaacttagtggatgaaaaattttaaaaaattcccggtttgttgtttcttcttgaaaag
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TGGCATTGAGAATTTTCAAGTTTCTGGTGATGCTATTCCTGGAGAAAAGCTTCTTGGATGTGGATATCCAGTCCGTGGAACTTCTCTTTGTATGTTTCAGgtg-aatattctt---tccatcaatatttaa--cttatcatatcatccatttccctcttctatttctgatatcactattattcttggcttcacatcag----