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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGGAGGCTGAGGAGTCAATGGTAGCAGAGAAGTGGCTTGAATTGTCTTCGTTAATGGTCACTTCAGCTGAATTGGTATCTTCTAAGATATCTGAGAAAGgtttgtgttcctattcttacttatacctgtttattttgtatgtctttcgagtattcaattctcagtgatttgcatctttttttaattcag

Basic information

species Arabidopsis thaliana
transcript AT3G02200.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86045209|gb|DR340964.1|DR340964
EST:     GTTAATGGTCACTTCAGCTGAATTGGTATCTTCTAAGATATCTGAGAAAG                         ATCTTGAGTGTACCTACACCATCATTTGCAGCATTGTCWAGAATGCKAAAA
genomic: GTTAATGGTCACTTCAGCTGAATTGGTATCTTCTAAGATATCTGAGAAAGgtttgtgttc ... tttaattcagATCTTGAGTGTACCTACACCATCATTTGCAGCATTGTCAAGAATGCGAAAA
EST: gi|86045215|gb|DR340970.1|DR340970
EST:     GTTAATGGTCACTTCAGCTGAATTGGTATCTTCTAAGATATCTGAGAAAG                         ATCTTGAGTGTACCTACACCATCATTTGCAGCATTG--AAGAATGCGAAAA
genomic: GTTAATGGTCACTTCAGCTGAATTGGTATCTTCTAAGATATCTGAGAAAGgtttgtgttc ... tttaattcagATCTTGAGTGTACCTACACCATCATTTGCAGCATTGTCAAGAATGCGAAAA
EST: gi|86045203|gb|DR340958.1|DR340958
EST:     GTTAATGGTCACTTCAGCTGAATTGGTATCTTCTAAGATATCTGAGAAAG                         ATCTTGAGTGTACCTACACCATCATTTGCAGCATTGTCAAGAATGCGAAAA
genomic: GTTAATGGTCACTTCAGCTGAATTGGTATCTTCTAAGATATCTGAGAAAGgtttgtgttc ... tttaattcagATCTTGAGTGTACCTACACCATCATTTGCAGCATTGTCAAGAATGCGAAAA
EST: gi|86045194|gb|DR340949.1|DR340949
EST:     GTTAATGGTCACTTCAGCTGAATTGGTATCTTCTAAGATATCTGAGAAAG                         ATCTTGAGTGTACCTACACCATCATTTGCAGCATTGTCAAGAATGCGAAAA
genomic: GTTAATGGTCACTTCAGCTGAATTGGTATCTTCTAAGATATCTGAGAAAGgtttgtgttc ... tttaattcagATCTTGAGTGTACCTACACCATCATTTGCAGCATTGTCAAGAATGCGAAAA
EST: gi|86045207|gb|DR340962.1|DR340962
EST:     GTTAATGGTCACTTCAGCTGAATTGGTATCTTCTAAGATATCTGAGAAAG                         ATCTTGAGTGTACCTACACCATCATTTGCAGCATTGTCAAGAATGCGAAAA
genomic: GTTAATGGTCACTTCAGCTGAATTGGTATCTTCTAAGATATCTGAGAAAGgtttgtgttc ... tttaattcagATCTTGAGTGTACCTACACCATCATTTGCAGCATTGTCAAGAATGCGAAAA
EST: gi|86045212|gb|DR340967.1|DR340967
EST:     GTTAATGGTCACTTCAGCTGAATTGGTATCTTCTAAGATATCTGAGAAAG                         ATCTTGAGTGTACCTACACCATCATTTGCAGCATTGTCAAGAATGCGAAAA
genomic: GTTAATGGTCACTTCAGCTGAATTGGTATCTTCTAAGATATCTGAGAAAGgtttgtgttc ... tttaattcagATCTTGAGTGTACCTACACCATCATTTGCAGCATTGTCAAGAATGCGAAAA
EST: gi|86045200|gb|DR340955.1|DR340955
EST:     GTTAATGGTCACTTCAGCTGAATTGGTATCTTCTAAGATATCTGAGAAAG                         ATCTTGAGTGTACCTACACCATCATTTGCAGCATTGTCAAGAATGCGAAAA
genomic: GTTAATGGTCACTTCAGCTGAATTGGTATCTTCTAAGATATCTGAGAAAGgtttgtgttc ... tttaattcagATCTTGAGTGTACCTACACCATCATTTGCAGCATTGTCAAGAATGCGAAAA
EST: gi|86045196|gb|DR340951.1|DR340951
EST:     GTTAATGGTCACTTCAGCTGAATTGGTATCTTCTAAGATATCTGAGAAAG                         ATCTTGAGTGTACCTACGCCATCATTTGCAGCATTGTCAAGAATGCGAAAA
genomic: GTTAATGGTCACTTCAGCTGAATTGGTATCTTCTAAGATATCTGAGAAAGgtttgtgttc ... tttaattcagATCTTGAGTGTACCTACACCATCATTTGCAGCATTGTCAAGAATGCGAAAA
EST: gi|86045199|gb|DR340954.1|DR340954
EST:     GTTAATGGTCACTTCAGCTGAATTGGTATCTTCTAAGATATCTGAGAAAG                         ATCTTGAGTGTACCTACACCATCATTTGCAGCATTGTCAAGAATGCGAAAA
genomic: GTTAATGGTCACTTCAGCTGAATTGGTATCTTCTAAGATATCTGAGAAAGgtttgtgttc ... tttaattcagATCTTGAGTGTACCTACACCATCATTTGCAGCATTGTCAAGAATGCGAAAA
EST: gi|86045216|gb|DR340971.1|DR340971
EST:     GTTAATGGTCACTTCAGCTGAATTGGTATCTTCTAAGATATCTGAGAAAG                         ATCTTGAGTGTACCTACACCATCATTTGCAGCATTGTCAAGAATGCGAAAA
genomic: GTTAATGGTCACTTCAGCTGAATTGGTATCTTCTAAGATATCTGAGAAAGgtttgtgttc ... tttaattcagATCTTGAGTGTACCTACACCATCATTTGCAGCATTGTCAAGAATGCGAAAA
EST: gi|86045193|gb|DR340948.1|DR340948
EST:     GTTAATGGTCACTTCAGCTGAATTGGTATCTTCTAAGATATCTGAGAAAG                         ATCTTGAGTGTACCTACACCATCATTTGCAGCATTGTCAAGAATGCGAAAA
genomic: GTTAATGGTCACTTCAGCTGAATTGGTATCTTCTAAGATATCTGAGAAAGgtttgtgttc ... tttaattcagATCTTGAGTGTACCTACACCATCATTTGCAGCATTGTCAAGAATGCGAAAA
EST: gi|86045197|gb|DR340952.1|DR340952
EST:     GTTAATGGTCACTTCAGCTGAATTGGTATCTTCTAAGATATCTGAGAAAG                         ATCTTGAGTGTACCTACACCATCATTTGCAGCATTGTCAAGAATGCGAAAA
genomic: GTTAATGGTCACTTCAGCTGAATTGGTATCTTCTAAGATATCTGAGAAAGgtttgtgttc ... tttaattcagATCTTGAGTGTACCTACACCATCATTTGCAGCATTGTCAAGAATGCGAAAA
EST: gi|86045195|gb|DR340950.1|DR340950
EST:     GTTAATGGTCACTTCAGCTGAATTGGTATCTTCTAAGATATCTGAGAAAG                         ATCTTGAGTGTACCTACACCATCATTTGCAGCATTGTCAAGAATGCGAAAA
genomic: GTTAATGGTCACTTCAGCTGAATTGGTATCTTCTAAGATATCTGAGAAAGgtttgtgttc ... tttaattcagATCTTGAGTGTACCTACACCATCATTTGCAGCATTGTCAAGAATGCGAAAA
EST: gi|86045208|gb|DR340963.1|DR340963
EST:     GTTAATGGTCACTTCAGCTGAATTGGTATCTTCTAAGATATCTGAGAAAG                         ATCTTGAGTGTACCTACACCATCATTTGCAGCATTGTCAAGAATGCGAAAA
genomic: GTTAATGGTCACTTCAGCTGAATTGGTATCTTCTAAGATATCTGAGAAAGgtttgtgttc ... tttaattcagATCTTGAGTGTACCTACACCATCATTTGCAGCATTGTCAAGAATGCGAAAA
EST: gi|124847654|gb|EH932091.1|EH932091
EST:     TATCTTCTAAGATATCTGAGAAAG                         ACCTTGAGTGTACCTACACCATCATTTGCAGCATTGTCAAGAATGCGAAAA
genomic: TATCTTCTAAGATATCTGAGAAAGgtttgtgttc ... tttaattcagATCTTGAGTGTACCTACACCATCATTTGCAGCATTGTCAAGAATGCGAAAA
EST: gi|86045198|gb|DR340953.1|DR340953
EST:     GTTAATGGTCACTTCAGCTGAATTGGTATCTTCTAAGATATCTGAGAAAG                         ATCTTGAGTGTWCCTACACCATCATTTGCAGCATTG--AAGAATGCGAAAA
genomic: GTTAATGGTCACTTCAGCTGAATTGGTATCTTCTAAGATATCTGAGAAAGgtttgtgttc ... tttaattcagATCTTGAGTGTACCTACACCATCATTTGCAGCATTGTCAAGAATGCGAAAA
EST: gi|86045201|gb|DR340956.1|DR340956
EST:     GTTAATGGTCACTTCAGCTGAATTGGTATCTTCTAAGATATCTGAGAAAG                         ATCTTGAGTGTACCTACACCATCATTTGCAGCATTGTCAAGAATGCGAAAA
genomic: GTTAATGGTCACTTCAGCTGAATTGGTATCTTCTAAGATATCTGAGAAAGgtttgtgttc ... tttaattcagATCTTGAGTGTACCTACACCATCATTTGCAGCATTGTCAAGAATGCGAAAA
EST: gi|86045204|gb|DR340959.1|DR340959
EST:     GTTAATGGTCACTTCAGCTGAATTGGTATCTTCTAAGATATCTGAGAAAG                         ATCTTGAGTGTACCTACACCATCATTTGCAGCATTGTCAAGAATGCGAAAA
genomic: GTTAATGGTCACTTCAGCTGAATTGGTATCTTCTAAGATATCTGAGAAAGgtttgtgttc ... tttaattcagATCTTGAGTGTACCTACACCATCATTTGCAGCATTGTCAAGAATGCGAAAA
EST: gi|86045205|gb|DR340960.1|DR340960
EST:     GTTAATGGTCACTTCAGCTGAATTGGTATCTTCTAAGATATCTGAGAAAG                         ATCTTGAGTGTACCTACACCATCATTTGCAGCATTGTCAAGAATGCGAAAA
genomic: GTTAATGGTCACTTCAGCTGAATTGGTATCTTCTAAGATATCTGAGAAAGgtttgtgttc ... tttaattcagATCTTGAGTGTACCTACACCATCATTTGCAGCATTGTCAAGAATGCGAAAA
EST: gi|86045206|gb|DR340961.1|DR340961
EST:     GTTAATGGTCACTTCAGCTGAATTGGTATCTTCTAAGATATCTGAGAAAG                         ATCTTGAGTGTACCTACACCATCATTTGCAGCATTGTCAAGAATGCGAAAA
genomic: GTTAATGGTCACTTCAGCTGAATTGGTATCTTCTAAGATATCTGAGAAAGgtttgtgttc ... tttaattcagATCTTGAGTGTACCTACACCATCATTTGCAGCATTGTCAAGAATGCGAAAA
EST: gi|86045210|gb|DR340965.1|DR340965
EST:     GTTAATGGTCACTTCAGCTGAATTGGTATCTTCTAAGATATCTGAGAAAG                         ATCTTGAGTGTACCTACACCATCATTTGCAGCATTGTCAAGAATGCGAAAA
genomic: GTTAATGGTCACTTCAGCTGAATTGGTATCTTCTAAGATATCTGAGAAAGgtttgtgttc ... tttaattcagATCTTGAGTGTACCTACACCATCATTTGCAGCATTGTCAAGAATGCGAAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGGGAGGCTGAGGAGTCAATGGTAGCAGAGAAGTGGCTTGAATTGTCTTCGTTAATGGTCACTTCAGCTGAATTGGTATCTTCTAAGATATCTGAGAAAGgtttgtgttcctattcttacttatacctgtttattttgtatgtctttcgagtattcaattctcagtgatttgcatctttttttaattcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA