1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaaatgattttttaaaaagagaaaattgttcttagacaacctaaaatgtagtgtcctcactctaattatcatattgttgaaaacagACAAGCGGAGACTCTGGTGCGAATGTGAAGAGGCTGGAGCAAGAGACTGATACCAAAATCGAGCAGTTGAAGAACGAAGCATCGAGGATTTCCAAAGATG
species | Arabidopsis thaliana |
transcript | AT3G01390.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGAATACAAAGCTCAAACAGAGCAAGACTTCCAGAAGGAAACTTGAGGAG ACAAGCGGAGACTCTGGTEST: gi|164015733|gb|ES056694.1|ES056694
genomic: CGAATACAAAGCTCAAACAGAGCAAGACTTCCAGA-GGAAACTTGAGGAGgtaaatgatt ... ttgaaaacagACAAGCGGAGACTCTGGT
EST: GACTTCCAGAGGAAACTTGAGGAG ACAAGCGGAGACTCTGGTGCGAATGTGAAGAGGCTGGAGCAAGAGACTGATEST: gi|164236084|gb|ES158093.1|ES158093
genomic: GACTTCCAGAGGAAACTTGAGGAGgtaaatgatt ... ttgaaaacagACAAGCGGAGACTCTGGTGCGAATGTGAAGAGGCTGGAGCAAGAGACTGAT
EST: GAAACTTGAGGAG ACAAGCGGAGACTCTGGTGCGAATGTGAAGAGGCTGGAGCAAGAGACTGATEST: gi|164048792|gb|ES168144.1|ES168144
genomic: GAAACTTGAGGAGgtaaatgatt ... ttgaaaacagACAAGCGGAGACTCTGGTGCGAATGTGAAGAGGCTGGAGCAAGAGACTGAT
EST: TCCAGAGGAAACTTGAGGAG ACAAGCGGAGACTCTGGTGTGAATGTGAAGAGGCTGGAGCAAGAGACTGATEST: gi|125215527|gb|EL229611.1|EL229611
genomic: TCCAGAGGAAACTTGAGGAGgtaaatgatt ... ttgaaaacagACAAGCGGAGACTCTGGTGCGAATGTGAAGAGGCTGGAGCAAGAGACTGAT
EST: AGGAAACTTGAGGAG ACAAGCGGAGACTCTGGTGCGAATGTGAAGAGGCTGGAGCAAGAGACTGATEST: gi|124949635|gb|EL025200.1|EL025200
genomic: AGGAAACTTGAGGAGgtaaatgatt ... ttgaaaacagACAAGCGGAGACTCTGGTGCGAATGTGAAGAGGCTGGAGCAAGAGACTGAT
EST: CTCAAACAGAGCAAGACTTCCAGAGGAAACTTGAGGAG ACAAGCGGAGACTCTGGTGCGAATGTGAAGAGGCTGGAGCAAGAGACTGATEST: gi|125301578|gb|EL315663.1|EL315663
genomic: CTCAAACAGAGCAAGACTTCCAGAGGAAACTTGAGGAGgtaaatgatt ... ttgaaaacagACAAGCGGAGACTCTGGTGCGAATGTGAAGAGGCTGGAGCAAGAGACTGAT
EST: CCGAATACAAAGCTCAAACAGAGCAAGACTTCCAGAGGAAACTTGAGGAG ACAAGCGGAGACTCTGGT
genomic: CCGAATACAAAGCTCAAACAGAGCAAGACTTCCAGAGGAAACTTGAGGAGgtaaatgatt ... ttgaaaacagACAAGCGGAGACTCTGGT
ttagacaacctaaaatgtagtgtcctcactctaattatcatattgttgaaaacagACAAGCGGAGACTCTGGTGCGAATGTGAAGAGGCTGGAGCAAGAGACTGATACCAAAATCGAGCAGTTGAAGAACGAAGCATCGAGGATTTCCAAAGATG
taattatcatattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatgattttttaaaaagagaaaattgttcttagacaacctaaaatgtagtgtcctcactctaattatcatattgttgaaaacagACAAGCGGAGACTCTGGTGCGAATGTGAAGAGGCTGGAGCAAGAGACTGATACCAAAATCGAGCAGTTGAAGAACGAAGCATCGAGGATTTCCAAAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG