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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACGATTATGACGGTGGCAGGGATTTAGATGACTTTGTAAGCTTCATCAACGAGAAATCTGGGACCAGCAGGGACAGTAAAGGGCAGCTTACTTCAAAGgttcggtaaaaacatgtcttctgcagaatcaccatttcccactaaaaattgaaaacttatgttgattctatcacactctcaatag

Basic information

species Arabidopsis thaliana
transcript AT2G47470.4
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163987918|gb|ES077863.1|ES077863
EST:     AGTAAAGGGCAGCTTACTTCAAAG                         GCTGGTATAGTCGAAAGCTTAGATGCTTTGGTAAAAGAGTTAGTTGCAGCT
genomic: AGTAAAGGGCAGCTTACTTCAAAGgttcggtaaa ... ctctcaatagGCTGGTATAGTCGAAAGCTTAGATGCTTTGGTAAAAGAGTTAGTTGCAGCT
EST: gi|164181519|gb|ES211671.1|ES211671
EST:     GGGACCAGCAGGGACAGTAAAGGGCAGCTTACTTCAAAG                         GCTGGTATAGTCGAAAGCTTTAGATGCTTTGGTAGAAGAGTTAGTTGCAGC
genomic: GGGACCAGCAGGGACAGTAAAGGGCAGCTTACTTCAAAGgttcggtaaa ... ctctcaatagGCTGGTATAGTCGAAAGCTT-AGATGCTTTGGTAAAAGAGTTAGTTGCAGC
EST: gi|124775466|gb|EH865595.1|EH865595
EST:     AGGGACAGTAGAGGGCAGCTTACTTCAAAG                         GCTGGTATAGTCGAAAGCTTAGATGCTTTGGTAAAAGAGTTAGTTGCAGCT
genomic: AGGGACAGTAAAGGGCAGCTTACTTCAAAGgttcggtaaa ... ctctcaatagGCTGGTATAGTCGAAAGCTTAGATGCTTTGGTAAAAGAGTTAGTTGCAGCT
EST: gi|124919149|gb|EH992929.1|EH992929
EST:     ACGAGAAATCTGGGACCAGCAGGGACAGTAAAGGGCAGCTTACTTCAAAG                         GCTGGTATAGTCGAAAGCTTAGATGCTTTGGTAAAAGAGTTAGTTG
genomic: ACGAGAAATCTGGGACCAGCAGGGACAGTAAAGGGCAGCTTACTTCAAAGgttcggtaaa ... ctctcaatagGCTGGTATAGTCGAAAGCTTAGATGCTTTGGTAAAAGAGTTAGTTG
EST: gi|116441306|gb|EG483898.1|EG483898
EST:     ACGAGAAATCTGGGACCAGCAGGGACAGTAAAGGGCAGCTTACTTCAAAG                         GCTGGTATAGTCGAAAGCTTAGATGCTTTGGTAAAAAGAGTTAGTTGCAGC
genomic: ACGAGAAATCTGGGACCAGCAGGGACAGTAAAGGGCAGCTTACTTCAAAGgttcggtaaa ... ctctcaatagGCTGGTATAGTCGAAAGCTTAGATGCTTTGGTAAAA-GAGTTAGTTGCAGC
EST: gi|124930071|gb|EL007555.1|EL007555
EST:     ACGAGAAATCTGGGACCAGCAGGGACAGTAAAGGGCAGCTTACTTCAAAG                         GCTGGTATAGTCGAAAGCTTAGATGCT
genomic: ACGAGAAATCTGGGACCAGCAGGGACAGTAAAGGGCAGCTTACTTCAAAGgttcggtaaa ... ctctcaatagGCTGGTATAGTCGAAAGCTTAGATGCT
EST: gi|164207103|gb|ES165097.1|ES165097
EST:     GGGACCAGCAGGGACAGTAAAGGGCAGCTTACTTCAAAG                         GCTGGTATAGTCGAAAGCTTAGATGCTTTGGTAGAAGAGTTAGTTGCAGCT
genomic: GGGACCAGCAGGGACAGTAAAGGGCAGCTTACTTCAAAGgttcggtaaa ... ctctcaatagGCTGGTATAGTCGAAAGCTTAGATGCTTTGGTAAAAGAGTTAGTTGCAGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCACGATTATGACGGTGGCAGGGATTTAGATGACTTTGTAAGCTTCATCAACGAGAAATCTGGGACCAGCAGGGACAGTAAAGGGCAGCTTACTTCAAAGgttcggtaaaaacatgtcttctgcagaatcaccatttcccactaaaaattgaaaacttatgttgattctatcacactctcaatag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT