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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATACGAAAAGGTAGCCACAGTGTTTAAACAGGAAGAAGGTGTAGTCATCGCCAATTTGGATGCTGATGCACACAAAGCCCTTGGCGAGAAgtaagttggacaggcattttattaataccgattttactgtttaaagtcatttatgtttcataaaaccaaaacataaagacaagtaccttatattcag

Basic information

species Arabidopsis thaliana
transcript AT2G47470.4
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124811516|gb|EH896382.1|EH896382
EST:     GTAGTCATCGCCAATTTGGATGCTGATGCACACAAAGCCCTTGGCGAGAA                         ATATGGAGTGAGTGGATTCCCAACA
genomic: GTAGTCATCGCCAATTTGGATGCTGATGCACACAAAGCCCTTGGCGAGAAgtaagttgga ... ttatattcagATATGGAGTGAGTGGATTCCCAACA
EST: gi|164188777|gb|ES024382.1|ES024382
EST:     TTGGATGCTGATGCACACAAAGCCCTTGGCGAGAA                         ATATGGAGTGAGTGGATTCCCAACATTGAAATTCTTCCCAAAGGACAACAA
genomic: TTGGATGCTGATGCACACAAAGCCCTTGGCGAGAAgtaagttgga ... ttatattcagATATGGAGTGAGTGGATTCCCAACATTGAAATTCTTCCCAAAGGACAACAA
EST: gi|164130240|gb|EL999537.1|EL999537
EST:     CAAAGCCCTTGGCGAGAA                         ATATGGAGTGAGTGGATTCCCAACATTGAAATTCTTCCCAAAGGACAACAA
genomic: CAAAGCCCTTGGCGAGAAgtaagttgga ... ttatattcagATATGGAGTGAGTGGATTCCCAACATTGAAATTCTTCCCAAAGGACAACAA
EST: gi|125218750|gb|EL232833.1|EL232833
EST:     GTAGTCATCGCCAATTTGGATGCTGATGCACACAAAGCCCTTGGCGAGAA                         ATATGGAGTGAGTGGATTCCCAA
genomic: GTAGTCATCGCCAATTTGGATGCTGATGCACACAAAGCCCTTGGCGAGAAgtaagttgga ... ttatattcagATATGGAGTGAGTGGATTCCCAA
EST: gi|124725939|gb|EH817341.1|EH817341
EST:     TCGCCAATTTGGATGCTGATGCACACAAAGCCCTTGGCGAGAA                         ATATGGAGTGAGTGGATTCCCAACATTGAAATTCTTCCCAAAAGGACA
genomic: TCGCCAATTTGGATGCTGATGCACACAAAGCCCTTGGCGAGAAgtaagttgga ... ttatattcagATATGGAGTGAGTGGATTCCCAACATTGAAATTCTTCCCAAA-GGACA
EST: gi|116441306|gb|EG483898.1|EG483898
EST:     GTAGTCATCGCCAATTTGGATGCTGATGCACACAAAGCCCTTGGCGAGAA                         ATATGGAGTGAGTGGATTCCCAACATTGAAATTCTTCCCAAAGGACAACAA
genomic: GTAGTCATCGCCAATTTGGATGCTGATGCACACAAAGCCCTTGGCGAGAAgtaagttgga ... ttatattcagATATGGAGTGAGTGGATTCCCAACATTGAAATTCTTCCCAAAGGACAACAA
EST: gi|125045498|gb|EL117767.1|EL117767
EST:     GTAGTCATCGCCAATTTGGATGCTGATGCACACAAAGCCCTTGGCGAGAA                         ATATGGAGTGAGTGGATTCCCAA
genomic: GTAGTCATCGCCAATTTGGATGCTGATGCACACAAAGCCCTTGGCGAGAAgtaagttgga ... ttatattcagATATGGAGTGAGTGGATTCCCAA
EST: gi|124813865|gb|EH898731.1|EH898731
EST:     GTAGTCATCGCCAATTTGGATGCTGATGCACACAAAGCCCTTGGCGAGAA                         ATATGGAGTGAGTGGATTCCCAACATTGAAATT
genomic: GTAGTCATCGCCAATTTGGATGCTGATGCACACAAAGCCCTTGGCGAGAAgtaagttgga ... ttatattcagATATGGAGTGAGTGGATTCCCAACATTGAAATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACATACGAAAAGGTAGCCACAGTGTTTAAACAGGAAGAAGGTGTAGTCATCGCCAATTTGGATGCTGATGCACACAAAGCCCTTGGCGAGAAgtaagttggacaggcattttattaataccgattttactgtttaaagtcatttatgtttcataaaaccaaaacataaagacaagtaccttatattcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT