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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCGCTGTTGGAGATCGTCTTGCAGTGATTACCACTGATCACTTCGTGGACCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAACgtaagttgtacattcctagctgaattactacttacgttttagccaacttcttgtatgtgttaaaaggaaattgtttgtttgatgcaattgtgtag

Basic information

species Arabidopsis thaliana
transcript AT2G46280.3
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86043174|gb|DR338929.1|DR338929
EST:     CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAAC                         AGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCC
genomic: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAACgtaagttgta ... aattgtgtagAGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCC
EST: gi|125237721|gb|EL251806.1|EL251806
EST:     CTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAAC                         AGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAGAAG
genomic: CTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAACgtaagttgta ... aattgtgtagAGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAGAAG
EST: gi|86043167|gb|DR338922.1|DR338922
EST:     CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAAC                         AGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAGA-GAGGA
genomic: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAACgtaagttgta ... aattgtgtagAGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAGAAGAGGA
EST: gi|86043162|gb|DR338917.1|DR338917
EST:     CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAAC                         AGGATGCTGAGTCTGTGC
genomic: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAACgtaagttgta ... aattgtgtagAGGATGCTGAGTCTGTGC
EST: gi|86043177|gb|DR338932.1|DR338932
EST:     CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAAC                         AGGATGCTGAGTCTGTGCTTGTCCTTCATTGTC-TGATGGAA
genomic: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAACgtaagttgta ... aattgtgtagAGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAA
EST: gi|86043163|gb|DR338918.1|DR338918
EST:     CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAAC                         AGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAG
genomic: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAACgtaagttgta ... aattgtgtagAGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAG
EST: gi|86043192|gb|DR338947.1|DR338947
EST:     CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAANATCCTGAGGAAC                         AGGATGCTGAGTCTGT
genomic: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAACgtaagttgta ... aattgtgtagAGGATGCTGAGTCTGT
EST: gi|86045975|gb|DR341730.1|DR341730
EST:     CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAAC                         AGGATGCTGAGTCTGTGCTTGTCCTTCATT
genomic: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAACgtaagttgta ... aattgtgtagAGGATGCTGAGTCTGTGCTTGTCCTTCATT
EST: gi|86043169|gb|DR338924.1|DR338924
EST:     CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAAC                         AGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAGAAGAGGA
genomic: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAACgtaagttgta ... aattgtgtagAGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAGAAGAGGA
EST: gi|86043196|gb|DR338951.1|DR338951
EST:     CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAAC                         AGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAGAAGAGGA
genomic: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAACgtaagttgta ... aattgtgtagAGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAGAAGAGGA
EST: gi|124808757|gb|EH894713.1|EH894713
EST:     CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAAC                         AGGATGCTGAGTC
genomic: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAACgtaagttgta ... aattgtgtagAGGATGCTGAGTC
EST: gi|86043168|gb|DR338923.1|DR338923
EST:     CCGTACCGCTGCTATTCATGTGAAGCGTATTGCG-AAGATCCTGAGGAAC                         AGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAGAAGAGGA
genomic: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAACgtaagttgta ... aattgtgtagAGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAGAAGAGGA
EST: gi|86043199|gb|DR338954.1|DR338954
EST:     CCGTACCGCTGCTATTCATGTGAAGCGTATTGCG-AAGATCCTGAGGAAC                         AGGATGCTGAGTCTGTGCTTGTCCTTCA
genomic: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAACgtaagttgta ... aattgtgtagAGGATGCTGAGTCTGTGCTTGTCCTTCA
EST: gi|86043189|gb|DR338944.1|DR338944
EST:     CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAAC                         AGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAGAAGAGGA
genomic: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAACgtaagttgta ... aattgtgtagAGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAGAAGAGGA
EST: gi|86043171|gb|DR338926.1|DR338926
EST:     CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAAC                         AGGATGCTGAGTCTGTGC
genomic: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAACgtaagttgta ... aattgtgtagAGGATGCTGAGTCTGTGC
EST: gi|116482868|gb|EG525460.1|EG525460
EST:     CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAAC                         AGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAGAAGAGGA
genomic: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAACgtaagttgta ... aattgtgtagAGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAGAAGAGGA
EST: gi|86043173|gb|DR338928.1|DR338928
EST:     CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAAC                         AGGATGCTGAGTCTGTGCTTGTCCTTTCATTGTCCTGATGG
genomic: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAACgtaagttgta ... aattgtgtagAGGATGCTGAGTCTGTGCTTGTCCTT-CATTGTCCTGATGG
EST: gi|86043188|gb|DR338943.1|DR338943
EST:     CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAAC                         AGGATGCTGAGTCTGTGC
genomic: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAACgtaagttgta ... aattgtgtagAGGATGCTGAGTCTGTGC
EST: gi|164125798|gb|ES068248.1|ES068248
EST:     GCGTATTGCGGAAGATCCTGAGGAAC                         AGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAGAAGAGGA
genomic: GCGTATTGCGGAAGATCCTGAGGAACgtaagttgta ... aattgtgtagAGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAGAAGAGGA
EST: gi|86043164|gb|DR338919.1|DR338919
EST:     CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAAC                         AGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAGAAGNG-A
genomic: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAACgtaagttgta ... aattgtgtagAGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAGAAGAGGA
EST: gi|86043194|gb|DR338949.1|DR338949
EST:     CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAAC                         AGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATG
genomic: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAACgtaagttgta ... aattgtgtagAGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATG
EST: gi|86043181|gb|DR338936.1|DR338936
EST:     CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAAC                         AGGATGCTGAGTCTGTGCTT
genomic: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAACgtaagttgta ... aattgtgtagAGGATGCTGAGTCTGTGCTT
EST: gi|86043195|gb|DR338950.1|DR338950
EST:     CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAAC                         AGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAGAAGAGGA
genomic: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAACgtaagttgta ... aattgtgtagAGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAGAAGAGGA
EST: gi|86043170|gb|DR338925.1|DR338925
EST:     CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAAC                         AGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAGAAGAGGA
genomic: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAACgtaagttgta ... aattgtgtagAGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAGAAGAGGA
EST: gi|86043197|gb|DR338952.1|DR338952
EST:     CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAAC                         AGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAGA
genomic: CCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAACgtaagttgta ... aattgtgtagAGGATGCTGAGTCTGTGCTTGTCCTTCATTGTCCTGATGGAAAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTCGCTGTTGGAGATCGTCTTGCAGTGATTACCACTGATCACTTCGTGGACCGTACCGCTGCTATTCATGTGAAGCGTATTGCGGAAGATCCTGAGGAACgtaagttgtacattcctagctgaattactacttacgttttagccaacttcttgtatgtgttaaaaggaaattgtttgtttgatgcaattgtgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA