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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatacatcgttcccggcttgttgaactttgtattcaagactctgaaatgatataccgatgctctggtcccatggttcttggtgtatacattttatcttttgtatgtttctgtaatattcatttctcataatatacagCATAAATGCTTCATAGTGGCTACATGTGATAGAGACTTAAAGCGAAGGATTCGAAAGGTAAAGATAGTTTGTTGTATCAGTGCTCTTGTTTATATCCATG

Basic information

species Arabidopsis thaliana
transcript AT2G46230.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G46230.2 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv15s0046g02690.t01 (Vitis vinifera), 3'ss of exon 6
gtaatacatcgttcccggcttgttgaactttgtattcaagactctgaaatgatataccgatgctctggtcccatggttcttggtgtatac-attttatcttttgtatgtttc-tgtaatattcatttctcataatatacagCATAAATGCTTCATAGTGGCTACATGTGATAGAGACTTAAAGCGAAGGATTCGAAAGGTAAAGATAGTTTGTTGTATCAGTGCTCTTGTTTATATCCATG
                                         || || |     ||  |  |      |||| |       || | | | | | | |    || | |||  |  |||       ||   |  |   | |||||||||||||| ||| || |||||||| ||| ||||||| |||||||||||||| |||                                           
-----------------------------------------ctatgcagctgaatgtcattataactgtccaaattgctctgttatcttctactatcctcttcgcatgagtaatgtgtgtactatactttgtttaaaacagCATAAATGCTACATTGTTGCTACATGCGATCGAGACTTGAAGCGAAGGATTCGCAAG-------------------------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatacattttatcttttgtatgtttctgtaatattcatttctcataatatacagCATAAATGCTTCATAGTGGCTACATGTGATAGAGACTTAAAGCGAAGGATTCGAAAGGTAAAGATAGTTTGTTGTATCAGTGCTCTTGTTTATATCCATG
                                      tttctcat  CT-rich tract
                             taatattcatttctca  TA-rich tract