1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TTACAAGGAAGAGGTTCTGAATCCAAACAAGAAGGACCTCACGGAACTTCCGAGAAACGTgtaagcttcctaccactgttagctttcgttgccaagttgtaattatttgggtttcgtttgatttgtttttggatcag
species | Arabidopsis thaliana |
transcript | AT2G46230.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAGGTTCTGAATCCAAACAAGAAGGACCTCACGGAACTTCCGAGAAACGT ACCGAGTGTTCCT-CAGGGCTTTTCTTTTCTTACAACTCTACATTGGTTCCEST: gi|86051135|gb|DR346890.1|DR346890
genomic: GAGGTTCTGAATCCAAACAAGAAGGACCTCACGGAACTTCCGAGAAACGTgtaagcttcc ... tttggatcagACCGAGTGTTCCTGCAGGGCTTTTCTTTTCTTACAACTCTACATTGGTTCC
EST: GAGGTTCTGAATCCAAACAAGAAGGACCTCACGGAACTTCCGAGAAACGT ACCGAGTGTTCCT-CAGGGCTTTTCTTTTCTTACAACTCTACATTGGTTCCEST: gi|86051133|gb|DR346888.1|DR346888
genomic: GAGGTTCTGAATCCAAACAAGAAGGACCTCACGGAACTTCCGAGAAACGTgtaagcttcc ... tttggatcagACCGAGTGTTCCTGCAGGGCTTTTCTTTTCTTACAACTCTACATTGGTTCC
EST: GAGGTTCTGAATCCAAACAAGAAGGACCTCACGGAACTTCCGAGAAACGT ACCGAGTGTTCCT-CAGGGCTTTTCTTTTCTTACAACTCTACATTGGTTCCEST: gi|164232504|gb|ES192846.1|ES192846
genomic: GAGGTTCTGAATCCAAACAAGAAGGACCTCACGGAACTTCCGAGAAACGTgtaagcttcc ... tttggatcagACCGAGTGTTCCTGCAGGGCTTTTCTTTTCTTACAACTCTACATTGGTTCC
EST: CCGAGAAACGT ACCGAGTGTTCCTGCAGGGCTTTTCTTTTCTTACAACTCTACATTGGTTCCEST: gi|86051134|gb|DR346889.1|DR346889
genomic: CCGAGAAACGTgtaagcttcc ... tttggatcagACCGAGTGTTCCTGCAGGGCTTTTCTTTTCTTACAACTCTACATTGGTTCC
EST: GAGGTTCTGAATCCAAACAAGAAGGACCTCACGGAACTTCCGAGAAACGT ACCGAGTGTTCCT-CAGGGCTTTTCTTTTCTTACAACTCTACATTGGTTCCEST: gi|164231305|gb|ES158777.1|ES158777
genomic: GAGGTTCTGAATCCAAACAAGAAGGACCTCACGGAACTTCCGAGAAACGTgtaagcttcc ... tttggatcagACCGAGTGTTCCTGCAGGGCTTTTCTTTTCTTACAACTCTACATTGGTTCC
EST: GAGGTTCTGAATCCAAACAAGAAGGACCTCACGGAACTTCCGAGAAACGT ACCGAGTGTTCCTGCAGGGCTTTTCTTTTCTTACAACTCTACATT
genomic: GAGGTTCTGAATCCAAACAAGAAGGACCTCACGGAACTTCCGAGAAACGTgtaagcttcc ... tttggatcagACCGAGTGTTCCTGCAGGGCTTTTCTTTTCTTACAACTCTACATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTACAAGGAAGAGGTTCTGAATCCAAACAAGAAGGACCTCACGGAACTTCCGAGAAACGTgtaagcttcctaccactgttagctttcgttgccaagttgtaattatttgggtttcgtttgatttgtttttggatcag
- - - - - - - - - - - - - - AAGAAG