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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATAGTCTCCTCCTATATCTCTACCTATACATACACAAACCCTTTATCCTCGAAAGCTTCCTCCTGGTTAGGTTTTTATCAAACCCTTTTAGCCAATCGgtaagatctcttcgtcatgatcttttcttttttcttttgctttgtactctgatggatctataaacttatatgggtttggtttcatttggttcgatttgat...

Basic information

species Arabidopsis thaliana
transcript AT2G45660.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124736666|gb|EH828068.1|EH828068
EST:     CTTCCTCCTGGTTAGGTTTTTATCAAACCCTTTTAGCCAATCG                         GGAAATTAACTAAAGAAGAAGATATGGTGAGGGGCAAAACTCAGATGAAGA
genomic: CTTCCTCCTGGTTAGGTTTTTATCAAACCCTTTTAGCCAATCGgtaagatctc ... tgtgtgcaagGGAAATTAACTAAAGAAGAAGATATGGTGAGGGGCAAAACTCAGATGAAGA
EST: gi|125201611|gb|EL216565.1|EL216565
EST:     TCGAAAGCTTCCTCCTGGTTAGGTTTTTGTCAAACCCTTTTAGCCAATCG                         GGAAATTAACTAAAGAAGAAGATATGGTGAGGGGCAAAACTCAGATGAAGA
genomic: TCGAAAGCTTCCTCCTGGTTAGGTTTTTATCAAACCCTTTTAGCCAATCGgtaagatctc ... tgtgtgcaagGGAAATTAACTAAAGAAGAAGATATGGTGAGGGGCAAAACTCAGATGAAGA