1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tatgtgtgtgactaatcttgttattgaggtggttgcaccattgatctaccgttttcttcaatttttgaaaaaataattttattttttttctgtgtgcaagGGAAATTAACTAAAGAAGAAGATATGGTGAGGGGCAAAACTCAGATGAAGAGAATAGAGAATGCAACAAGCAGACAAGTGACTTTCTCCAAAAGAAGGAA
species | Arabidopsis thaliana |
transcript | AT2G45660.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTTCCTCCTGGTTAGGTTTTTATCAAACCCTTTTAGCCAATCG GGAAATTAACTAAAGAAGAAGATATGGTGAGGGGCAAAACTCAGATGAAGAEST: gi|125201611|gb|EL216565.1|EL216565
genomic: CTTCCTCCTGGTTAGGTTTTTATCAAACCCTTTTAGCCAATCGgtaagatctc ... tgtgtgcaagGGAAATTAACTAAAGAAGAAGATATGGTGAGGGGCAAAACTCAGATGAAGA
EST: TCGAAAGCTTCCTCCTGGTTAGGTTTTTGTCAAACCCTTTTAGCCAATCG GGAAATTAACTAAAGAAGAAGATATGGTGAGGGGCAAAACTCAGATGAAGA
genomic: TCGAAAGCTTCCTCCTGGTTAGGTTTTTATCAAACCCTTTTAGCCAATCGgtaagatctc ... tgtgtgcaagGGAAATTAACTAAAGAAGAAGATATGGTGAGGGGCAAAACTCAGATGAAGA
ctaccgttttcttcaatttttgaaaaaataattttattttttttctgtgtgcaagGGAAATTAACTAAAGAAGAAGATATGGTGAGGGGCAAAACTCAGATGAAGAGAATAGAGAATGCAACAAGCAGACAAGTGACTTTCTCCAAAAGAAGGAA
ttttattttttttctg CT-rich tract
ttttcttcaatttttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgtgtgtgactaatcttgttattgaggtggttgcaccattgatctaccgttttcttcaatttttgaaaaaataattttattttttttctgtgtgcaagGGAAATTAACTAAAGAAGAAGATATGGTGAGGGGCAAAACTCAGATGAAGAGAATAGAGAATGCAACAAGCAGACAAGTGACTTTCTCCAAAAGAAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - actaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaataa