Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGATGCTACACCTTCAGATTACATTTCCATGATAATCACAGATTATGGCATGgtaagattaatcatatcggctcttaattaaaaacatagcattatggtgatcaagtgatctcatccctaaacataactcatgcaacacagtttctccactcattcagaatctcaaaccattgaacactgaccatgttttatatttcag

Basic information

species Arabidopsis thaliana
transcript AT2G44070.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G44070.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA18G51570.1 (Glycine max), 5'ss of exon 8
------------------GTATGATGCTACACCTTCAGATTACATTTCCATGATAATCACAGATTATGGCATGgtaagattaatcatatcggctcttaattaaaaacatagcattatggtgatcaagtgatctcatccctaaacataactcatgcaacacagtttctccactcattcagaatctcaaaccattgaacactgaccatgttttatatttcag
                   |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||       || |      ||| |||    | | | | ||      | |||||  ||     |    ||   || |||  | |  |||  |  |   ||||                                           
TCTCTATATTGATGCCAGCTATGATGCTACACCTTCAGATTACGTTTCCATGATAATCACAGATTATGGCATGGtaagtgctggaatttaaagatttatttagttgc-tggtagtagatacctaaagtgtgctttataccgggcacccct-atgttagattgttagt--atggattct------------------------------------------

upper sequence: AT2G44070.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA13G07460.1 (Glycine max), 5'ss of exon 7
GTATGATGCTACACCTTCAGATTACATTTCCATGATAATCACAGATTATGGCATGgtaagattaatcatatcggctcttaattaaaaacatagcattatggtgatcaagtgatctcatccctaaacataactcatgcaacacagtttctccactcattcagaatctcaaaccattgaacactgaccatgttttatatttcag
 |||||||| ||||||||||||||  |||| |||||  ||||||||||||||||||||||        ||  |    || ||  |  |  |   ||  | |     ||        |  |||||| ||  | |||    || | |||         |      |  | ||| | |                           
TTATGATGCAACACCTTCAGATTATGTTTCAATGATTGTCACAGATTATGGCATGgtaag--------tactgaaattttatagaggattttttatctttgctgctaaa-------acgcctaaa-atgccccat----cagaattttatttagtttgtgttgtgccgaactagt---------------------------

upper sequence: AT2G44070.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA19G05900.1 (Glycine max), 5'ss of exon 7
GTATGATGCTACACCTTCAGATTACATTTCCATGATAATCACAGATTATGGCATGgtaagattaatcatatcggctcttaattaaaaacatagcattatggtgatcaagtgatctcatccctaaacataactcatgcaacacagtttctccactcattcagaatctcaaaccattgaacactgaccatgttttatatttcag
 |||||||| ||||||||||||||  |||| |||||  ||||||||||||||||||||||        ||  ||   || ||  |  |  |    || |     |   |  |   ||| |||||| ||    |||      ||| || |  | | | |  |  |  ||     ||||||                       
TTATGATGCAACACCTTCAGATTATGTTTCAATGATTGTCACAGATTATGGCATGgtaag--------tactggagttttatagaggattt----ttttacctttgctgctaaaacatgcctaaa-atgttccat------cagattttt-atttagtttgtgttgca-----ttgaact----------------------

upper sequence: AT2G44070.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv17s0000g04230.t01 (Vitis vinifera), 5'ss of exon 6
GTATGATGCTACACCTTCAGATTACATTTCCATGATAATCACAGATTATGGCATGgtaagattaatcat-atcggct--cttaattaaaaacatagcattatggtgatcaagtgatctcatccctaaacataactcatgcaacacagtttctccactcattcagaatctcaaaccattgaacactgaccatgttttatatttcag
 ||||||||||| || ||||||||  | || ||||| ||||| |||||||||||||||||     | || || ||     |||| |   | |||  | |  | ||    |||||| | ||     |||   ||    | | |   | ||  ||||                                                  
CTATGATGCTACTCCGTCAGATTATGTCTCTATGATTATCACTGATTATGGCATGgtaagtcatgttatgattggaaagtttaaatttgagcatttcttctttgtttctaagtgagcccagaaagaaaataaatctttactatttatttcttcca--------------------------------------------------

upper sequence: AT2G44070.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv14s0083g00170.t01 (Vitis vinifera), 5'ss of exon 6
GTATGATGCTACACCTTCAGATTACATTTCCATGATAATCACAGATTATGGCATGgtaagat-taatcatatcggctcttaattaaaaacatagcattatggtgatcaagtgatctcatccctaaacataactcatgcaacacagtttctccactcattcagaatctcaaaccattgaacactgaccatgttttatatttcag
 |||||||| ||||||||||||||  |||| ||||| || ||||||||||||||||||||   || | ||||      || ||      ||||   ||  |   |     |    | |||| ||    |  |    | |||    | |||| | | |||                                            
ATATGATGCAACACCTTCAGATTATGTTTCGATGATTATAACAGATTATGGCATGgtaagtcatattaatattaaaattttat--gtttcatacttttgagaaaacacgctttatttatccttagttttc-caagagtaacctgatctctc-agttatt--------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124709553|gb|EH800955.1|EH800955
EST:     ATGCTACACCTTCAGATTACATTTCCATGATAATCACAGATTATGGCATG                         GTACCTCCCACAAGTG
genomic: ATGCTACACCTTCAGATTACATTTCCATGATAATCACAGATTATGGCATGgtaagattaa ... tatatttcagGTACCTCCCACAAGTG
EST: gi|125281431|gb|EL295516.1|EL295516
EST:     TGCTACACCTTCAGTATTACATTTCCATGATAATCACAGATTATGGCATG                         GTACCTCCCACAAGTGTGCCTGTCAT
genomic: TGCTACACCTTCAG-ATTACATTTCCATGATAATCACAGATTATGGCATGgtaagattaa ... tatatttcagGTACCTCCCACAAGTGTGCCTGTCAT