1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagattaatcatatcggctcttaattaaaaacatagcattatggtgatcaagtgatctcatccctaaacataactcatgcaacacagtttctccactcattcagaatctcaaaccattgaacactgaccatgttttatatttcagGTACCTCCCACAAGTGTGCCTGTCATCGTAAGAGAATATCAGAAAGAACACTTGCTTCAAAGCTCAAAGATTGTTATTTAGATGCTCAAAATAGAAGTAA
species | Arabidopsis thaliana |
transcript | AT2G44070.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGCTACACCTTCAGATTACATTTCCATGATAATCACAGATTATGGCATG GTACCTCCCACAAGTGEST: gi|125281431|gb|EL295516.1|EL295516
genomic: ATGCTACACCTTCAGATTACATTTCCATGATAATCACAGATTATGGCATGgtaagattaa ... tatatttcagGTACCTCCCACAAGTG
EST: TGCTACACCTTCAGTATTACATTTCCATGATAATCACAGATTATGGCATG GTACCTCCCACAAGTGTGCCTGTCAT
genomic: TGCTACACCTTCAG-ATTACATTTCCATGATAATCACAGATTATGGCATGgtaagattaa ... tatatttcagGTACCTCCCACAAGTGTGCCTGTCAT
ctccactcattcagaatctcaaaccattgaacactgaccatgttttatatttcagGTACCTCCCACAAGTGTGCCTGTCATCGTAAGAGAATATCAGAAAGAACACTTGCTTCAAAGCTCAAAGATTGTTATTTAGATGCTCAAAATAGAAGTAA
cactgac putative branch site (score: 2)
atgttttatatttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagattaatcatatcggctcttaattaaaaacatagcattatggtgatcaagtgatctcatccctaaacataactcatgcaacacagtttctccactcattcagaatctcaaaccattgaacactgaccatgttttatatttcagGTACCTCCCACAAGTGTGCCTGTCATCGTAAGAGAATATCAGAAAGAACACTTGCTTCAAAGCTCAAAGATTGTTATTTAGATGCTCAAAATAGAAGTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT