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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGTTTACAGTTTTGGAGTTGTGCTTTTGGAACTTCTTACCGGGAGAAAACCGGTTGATCATACTATGCCTCGTGGTCAACAGAGTCTTGTCACTTGGgtacttaacttacttaatttgactctttctttctgagactaccaaatcttttcttggttataactttctctgtaaatctaatatccag

Basic information

species Arabidopsis thaliana
transcript AT2G43230.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G43230.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os03g62700.1 (Oryza sativa), 5'ss of exon 6
TGATGTTTACAGTTTTGGAGTTGTGCTTTTGGAACTTCTTACCGGGAGAAAACCGGTTGATCATACTATGCCTCGTGGTCAACAGAGTCTTGTCACTTGGgta------cttaacttacttaatttgactctttctttctgagactaccaaatcttttcttggt-tataac--tttctctgtaaatctaatatccag---
|||||| ||||||||||| || || ||||||||||| || || || || ||||| || || || || |||||||| || || || ||||| ||||||||||||      ||  ||   || ||   |      ||  |  |   || || |  | |  |   |   | ||    | |  | ||   || | |   |    
TGATGTGTACAGTTTTGGTGTAGTTCTTTTGGAACTCCTGACTGGAAGGAAACCAGTGGACCACACAATGCCTCGGGGACAGCAAAGTCTAGTCACTTGGgtaagttgtctctaccacctaaaagcggagtcgtccatacgctccttcccacgcgtcacaaagcacacaagcactgccttctaggcctgaaaataacaga

upper sequence: AT2G43230.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os01g67340.1 (Oryza sativa), 5'ss of exon 6
TGATGTTTACAGTTTTGGAGTTGTGCTTTTGGAACTTCTTACCGGGAGAAAACCGGTTGATCATACTATGCCTCGTGGTCAACAGAGTCTTGTCACTTGGgtacttaacttacttaatttgactctttctttctgagacta---ccaaatcttttcttggttataactttctctgtaaatctaatatccag---------------------------------------------------------------------------------------------------
|||||| || || || |||||||| || ||||||||||| || || |||||||| || |||||||| |||||| | || || |||||  | || || |||||| |   |    |  | || |||| ||  |  ||    ||    || |||   |||   |      |||  | |   ||    | | |||                                                                                                   
TGATGTGTATAGCTTCGGAGTTGTTCTCTTGGAACTTCTGACAGGAAGAAAACCAGTAGATCATACAATGCCTAGAGGGCAGCAGAGCTTGGTTACATGGgtaatgttcaccatatagtttactcatttatcttgtcgttaagttcagatcacatctgaatatctgatttagcagcttatagtgtctacagttaacaccttgattagtacaatgtagcaatacgcagcccaatcctttagtggctactttttacctagttctctgagcatgtctcagttctgttttgcag

upper sequence: AT2G43230.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G153945_T03 (Zea mays), 5'ss of exon 6
TGATGTTTACAGTTTTGGAGTTGTGCTTTTGGAACTTCTTACCGGGAGAAAACCGGTTGATCATACTATGCCTCGTGGTCAACAGAGTCTTGTCACTTGGgtacttaacttacttaatttgact--ctttctttctgagactaccaaatcttttcttggttataactttctctgtaaatctaatatccag---------------
|||||| || |||||||| ||||| ||||| || |||||||| || || ||||| || |||||||| |||||  | || || ||||||||||| ||||||||| | || | |  |  |   |||  | ||||   |||   |   |||||  || |||      | ||   | | | |  ||    | ||               
TGATGTATATAGTTTTGGGGTTGTCCTTTTAGAGCTTCTTACTGGAAGGAAACCTGTAGATCATACAATGCCAAGGGGCCAGCAGAGTCTTGTTACTTGGgta-tgaattaaaattttcatactaccattctcaatgatgttttaaaatcagtttttgcc----atttctcccgaacaattaccgacaagctatttatacatgct

upper sequence: AT2G43230.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G001668_T01 (Zea mays), 5'ss of exon 6
TGATGTTTACAGTTTTGGAGTTGTGCTTTTGGAACTTCTTACCGGGAGAAAACCGGTTGATCATACTATGCCTCGTGGTCAACAGAGTCTTGTCACTTGGgtacttaacttacttaatttgactctttctttctgagactaccaaatcttttcttggttataactttctctgtaaatctaatatccag--------------
|||||| ||||| ||||| || || |||||||||||| | || || || ||||| || ||||| || |||||||| |||||||| ||| | ||||| ||||||  | | ||   ||| || ||  |        |   ||      |  ||     || ||| ||     ||  |  || | ||                  
TGATGTCTACAGCTTTGGTGTGGTTCTTTTGGAACTTTTGACTGGAAGGAAACCAGTAGATCACACAATGCCTCGAGGTCAACAAAGTTTAGTCACATGGgtaagttattttgctaactt-acattggagaatggttgcttatgtgttgttgtgcagtaata-ctactattgccatactgacatggcttcacaaaaatagcc

upper sequence: AT2G43230.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA20G38980.1 (Glycine max), 5'ss of exon 7
TGATGTTTACAGTTTTGGAGTTGTGCTTTTGGAACTTCTTACCGGGAGAAAACCGGTTGATCATACTATGCCTCGTGGTCAACAGAGTCTTGTCACTTGGgt-acttaacttacttaatttga---ctctttctttctgagactaccaaatcttttc----------ttggttataactttctctgtaaatctaatatccag------
|||||| || |||||||| ||||| ||| | || |||||||| || |||||||| ||||| ||||| |||||| | || || |||||||||||||| ||||| | |     | |||||  | |   ||| | | | |||   ||    |||| |||           | ||  |||  | | |   | |   | ||||          
TGATGTCTATAGTTTTGGTGTTGTTCTTCTTGAGCTTCTTACAGGAAGAAAACCTGTTGACCATACCATGCCTAGAGGACAGCAGAGTCTTGTCACATGGgtcagtgtgtctgcttaaactcatacctcatccgtgctgctgcttttcaatcatttaacactggttgtcggccataggtattttgttgacattgatatttttttgtag

upper sequence: AT2G43230.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA10G44210.1 (Glycine max), 5'ss of exon 7
TGATGTTTACAGTTTTGGAGTTGTGCTTTTGGAACTTCTTACCGGGAGAAAACCGGTTGATCATACTATGCCTCGTGGTCAACAGAGTCTTGTCACTTGGgtacttaacttacttaatttgactctttctttctgagactaccaaatctttt---cttggttat-aactttctctgtaaatctaatatccag-----------
|||||| || |||||||| || || ||| | || |||||||| || |||||||| ||||| ||||| |||||| | || || |||||||||||||| |||||   |    | |||||  | |  | |  |  |||    |    |||| |||     ||||| | | |  |   | |     | ||||  |            
TGATGTCTATAGTTTTGGTGTGGTTCTTCTTGAGCTTCTTACTGGCAGAAAACCTGTTGACCATACCATGCCTAGAGGACAGCAGAGTCTTGTCACATGGgtcagtgtgctgcttaaactcatacctcatcgctgctgtttttcaatcatttaccactggttgtcagccatagatattttgttgatattgatattttttgtag

upper sequence: AT2G43230.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv05s0124g00360.t01 (Vitis vinifera), 5'ss of exon 6
TGATGTTTACAGTTTTGGAGTTGTGCTTTTGGAACTTCTTACCGGGAGAAAACCGGTTGATCATACTATGCCTCGTGGTCAACAGAGTCTTGTCACTTGGgta--cttaacttacttaatttgactctttctttctgagactaccaaatcttttcttggttataactttctctgt---aaatctaatatccag-----------------------------------------
|||||| || |||||||||||||| || || || ||||| || ||||||||||| ||||||||||| ||||||||||| ||||| ||||| ||||| |||||    ||    | |||  | || || |||  ||   || ||             |   ||  || |||||||     ||||    | ||                                            
TGATGTGTATAGTTTTGGAGTTGTTCTGTTAGAGCTTCTAACTGGGAGAAAACCTGTTGATCATACCATGCCTCGTGGACAACAAAGTCTGGTCACCTGGgtgggttttttcttctttttctgcctatttgcttaaaagccttttgttcacccagtgcctttcaagtttctctactccaaattgcttttctttgatatatatctataatctaaagtgaacatttctcatcttag