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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAAGATTGCTGACTTTAATCTTTCCAATCAAGCTCCTGATATGGCTGCTCGTCTTCATTCCACTAGAGTTTTGGGGACCTTCGGTTATCATGCACCAGAgtaaatatgcttcaacattgatagctcggaattttcttgattcttagtaactgaaagaatgtaactttgggtttgcag

Basic information

species Arabidopsis thaliana
transcript AT2G43230.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G43230.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os01g67340.3 (Oryza sativa), 5'ss of exon 5
CCAAGATTGCTGACTTTAATCTTTCCAATCAAGCTCCTGATATGGCTGCTCGTCTTCATTCCACTAGAGTTTTGGGGACCTTCGGTTATCATGCACCAGAgtaaatatgctt-caacattgatagctcggaattttcttgattcttagtaactgaaagaatgtaactttgggtttgcag---------------------
| ||  |||| ||||| ||||| || ||||| ||||| ||||||||||||||||| ||||| ||| | ||  |||| ||||| ||||||||||| |||||||||| || ||| | | |||    | |     || | ||  |  | | |    |      | || | ||   | | ||                      
CAAAAGTTGCAGACTTCAATCTCTCAAATCAGGCTCCAGATATGGCTGCTCGTCTGCATTCTACTCGTGTACTGGGAACCTTTGGTTATCATGCTCCAGAgtaaaaattcttaccatattctgtgatgaactttattttactgttcaattgtagtttctttatagcattacttcttcaattaactttggaaaggaccagt

upper sequence: AT2G43230.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os03g62700.1 (Oryza sativa), 5'ss of exon 5
CCAAGATTGCTGACTTTAATCTTTCCAATCAAGCTCCTGATATGGCTGCTCGTCTTCATTCCACTAGAGTTTTGGGGACCTTCGGTTATCATGCACCAGAgtaa------atatgcttcaacat-tgatagctcggaattttcttgattcttagtaactgaaagaatgtaactttgggtttgcag-----------------
| || ||||| || || ||||| |  ||||||||||| |||||||| || || |||||||| ||| | || || || ||||| || ||||||||||||||||||      || |    |||    |     |   ||| |  ||  ||      | |||  ||   | | | |   |     |||                 
CAAAAATTGCAGATTTCAATCTCTTAAATCAAGCTCCAGATATGGCAGCACGCCTTCATTCAACTCGTGTATTAGGAACCTTTGGATATCATGCACCAGAgtaatgtctaatttataccaatgcatttcttcatagaactcactatatcgcgtcttacttcaat--ttttaatccagcccaacagtagttaaaatatatgtt

upper sequence: AT2G43230.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G153945_T03 (Zea mays), 5'ss of exon 5
CCAAGATTGCTGACTTTAATCTTTCCAATCAAGCTCCTGATATGGCTGCTCGTCTTCATTCCACTAGAGTTTTGGGGACCTTCGGTTATCATGCACCAGAgtaaatatgcttca-acattgatagctcggaattttcttgattcttagtaactgaaagaatgtaactttgggtttgcag----------------------
|||| ||||| ||||| |||||||| |  ||| |||| ||||||||||||||||| ||||| ||| | ||  | || |||||||| |||||||| ||||||||| |||    || ||||    |  |||    |   |||  |  | ||| ||   |  |||   |       ||                          
CCAAAATTGCAGACTTCAATCTTTCAAGCCAATCTCCAGATATGGCTGCTCGTCTACATTCTACTCGTGTCCTTGGAACCTTCGGATATCATGCTCCAGAgtaattatttgacatacatatgcaattcgctcatactttgcataat-gtatctaggattatgcccccacataattatcatttatttaactttatcctcatt

upper sequence: AT2G43230.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G001668_T01 (Zea mays), 5'ss of exon 5
CCAAGATTGCTGACTTTAATCTTTCCAATCAAGCTCCTGATATGGCTGCTCGTCTTCATTCCACTAGAGTTTTGGGGACCTTCGGTTATCATGCACCAGAgtaaatat---gcttcaacattgatagctcggaattttcttgattcttagtaactgaaa---gaatgtaactttgggtttgcag----------------
| || ||||| |||||||||||||  || ||||| || |||||||| |||||||| ||||| ||| | || |||||||| || || |||||||| || |||||| | |       |   ||| |||      |  ||  || ||| | |  |     |    || || | ||||       ||                 
CAAAAATTGCAGACTTTAATCTTTTGAACCAAGCACCAGATATGGCAGCTCGTCTCCATTCAACTCGTGTATTGGGGACTTTTGGATATCATGCTCCTGAgtaattgtttaatacccttattcataataattatcttctttcattttcatcattgttagtctgactgcacctttctcagctcaactgtagctttctcttt

upper sequence: AT2G43230.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G346132_T01 (Zea mays), 5'ss of exon 5
CCAAGATTGCTGACTTTAATCTTTCCAATCAAGCTCCTGATATGGCTGCTCGTCTTCATTCCACTAGAGTTTTGGGGACCTTCGGTTATCATGCACCAGAgtaaatatgcttcaacattgatagct--------cggaattttcttgattcttagtaactg----aaagaatgtaactttgggtttgcag----------
| ||||| || ||||||||||| || ||||| ||||| ||||||||||| ||  | ||||| ||| | || ||||| ||||| || |||||||| |||||||||| |  |||         || ||        |  || |||  |  | |||     ||     |  |  |||  | ||   |||  ||          
CAAAGATAGCAGACTTTAATCTCTCAAATCAGGCTCCAGATATGGCTGCCCGGTTGCATTCAACTCGTGTCTTGGGAACCTTTGGATATCATGCTCCAGAgtaaaaacccttttcttaaagtaactatatgttacttaactttagttgtgctttcctgcttttgcatgggttgtctcattaattttcgagttggtcagca

upper sequence: AT2G43230.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G071877_T01 (Zea mays), 5'ss of exon 5
CCAAGATTGCTGACTTTAATCTTTCCAATCAAGCTCCTGATATGGCTGCTCGTCTTCATTCCACTAGAGTTTTGGGGACCTTCGGTTATCATGCACCAGAgtaa-------atatgcttcaacat--tgatagctcggaattttcttgattcttagtaactgaaa---gaatgtaacttt---gggtttgcag-------
| || ||||| ||||| |||||||  || ||||| || |||||||| |||||||| ||||| ||| | || ||||| || || || ||||||||||| ||||||       |||  |||   |||  | ||              || ||| | | |   | | |   || || ||||||    |||   | |       
CAAAAATTGCAGACTTCAATCTTTTGAACCAAGCACCAGATATGGCAGCTCGTCTCCATTCAACTCGTGTATTGGGAACTTTTGGATATCATGCACCTGAgtaattgtttaatactcttattcatgataattatcttctgccacattcattttcatttttttacacttgactgcaactttctcaggtcaactgtagcttt

upper sequence: AT2G43230.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA20G38980.1 (Glycine max), 5'ss of exon 6
CCAAGATTGCTGACTTTAATCTTTCCAATCAAGCTCCTGATATGGCTGCTCGTCTTCATTCCACTAGAGTTTTGGGGACCTTCGGTTATCATGCACCAGAgtaaatatgcttcaaca--ttgatagctcggaattttcttgattcttagtaactgaaagaatgtaactttgggtttgcag---------------------------
||||||| ||||||||||| ||||| ||||| || ||||| |||||||| ||||||||||| ||| | || ||||| || || ||||||||||| |||||||||    ||||| | |   || ||||    ||||||  | ||    | |  ||   | | |    |||||  ||   |                            
CCAAGATAGCTGACTTTAACCTTTCTAATCAGGCCCCTGACATGGCTGCACGTCTTCATTCAACTCGTGTATTGGGAACTTTTGGTTATCATGCTCCAGAgtaa----gcttcgagaacctgctagcatttaatttttat-atctacatttgctttcatatttc--ctttgaattcatatgcatgctatcatgtattacaaggaagg

upper sequence: AT2G43230.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv05s0124g00360.t01 (Vitis vinifera), 5'ss of exon 5
CCAAGATTGCTGACTTTAATCTTTCCAATCAAGCTCCTGATATGGCTGCTCGTCTTCATTCCACTAGAGTTTTGGGGACCTTCGGTTATCATGCACCAGAgtaaatatgcttcaacattgatagctcggaattttcttgattcttagtaact---gaaagaat------gtaactttgggtttgcag---------------
|||||||||| || ||||||||||| ||||| |||||||| ||||||||||| |||||||| ||| ||||  |||||||||| || ||||||||||||||||||  || ||  |||  | ||    |    |||  |||| | ||| || ||   ||   |||      ||||  ||   |||  |                
CCAAGATTGCAGATTTTAATCTTTCAAATCAGGCTCCTGACATGGCTGCTCGCCTTCATTCTACTCGAGTCCTGGGGACCTTTGGCTATCATGCACCAGAgtaatgattctgtaac--ttattttcctttgtttctttgactattattatcttatgagttaattgtttggtaaaattatttttataagattgccttcttgta