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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattttatctagtttgctgtgtagtgaattatgattgttctctgttatgcttataatggtctgtactccagGTTGCGACTGTACTTCTTTGCTGCGCATTTGTCTATGACATTTTCTGGGTCTTCATATCTCCATTGATATTTCACGAGAGTGTTATGATTGTG

Basic information

species Arabidopsis thaliana
transcript AT2G43070.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G43070.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: GLYMA08G47600.2 (Glycine max), 3'ss of exon 8
-------------------------------------------gtattttatctagtttgctgtgtagtgaattatgattgttctctgttatgcttataatggtctg-tactccagGTTGCGACTGTACTTCTTTGCTGCGCATTTGTCTATGACATTTTCTGGGTCTTCATATCTCCATTGATATTTCACGAGAGTGTTATGATTGTG
                                            | | |||   | |||| | |||| |  ||||  |  |  ||||  ||   |   |    |||| ||    ||||||| |||||||| ||||| || || ||||||||||||||||| ||||| |||||||||||| |||| || |||||||||||||||||||  
gtacccaaatggattctttatgtctacaatcaaataatcatttttctcttactcactttgttatgta-tctattaaaacag--ctctaataatttctcatgcatctgatataatagGTTGCAACTGTACTCCTTTGTTGTGCCTTTGTCTATGACATTTTTTGGGTATTCATATCTCCAGTGATTTTCCACGAGAGTGTTATGATTGCC

upper sequence: AT2G43070.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: GLYMA18G53880.1 (Glycine max), 3'ss of exon 8
---------------------------------------------------gtattttatctagtttgctgtgtagtgaattatgattgttctctgttatgcttataatggtctg-tactccagGTTGCGACTGTACTTCTTTGCTGCGCATTTGTCTATGACATTTTCTGGGTCTTCATATCTCCATTGATATTTCACGAGAGTGTTATGATTGTG
                                                    | | ||| |   |||| | |||| |  ||||  |  |  ||||  ||   |   |    |||| ||    ||||||| |||||||| ||||| || || ||||||||||||||||| ||||| |||||||||||| |||| || || ||||||||||||||||  
gtacccaaatggattctttatttctacaatcaaataatcaattaatcattcttctcttaccctttttgttatgta-tctattaaaacag--ctctactaatttctcatgcatctgatataatagGTTGCAACTGTACTCCTTTGTTGTGCTTTTGTCTATGACATTTTTTGGGTATTCATATCTCCAGTGATTTTCCATGAGAGTGTTATGATTGCA

upper sequence: AT2G43070.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: GLYMA20G39260.1 (Glycine max), 3'ss of exon 8
------------------------------------gtatttt---atctagtttgctgtgtagtgaattatgattgttctc-tgttatgcttataatggtctgtactccagGTTGCGACTGTACTTCTTTGCTGCGCATTTGTCTATGACATTTTCTGGGTCTTCATATCTCCATTGATATTTCACGAGAGTGTTATGATTGTG
                                     |||||    |   | || |||      |   ||   |   |||||    | |||||||         ||    ||||||| |||||||| ||||| || |||||||| || ||||| || ||||| |||||||||||| ||||||| ||  ||||||||||||||   
gtacctgaatgagttccttgtgtttatattgtactgctatttccacactcatttagctccaatatctgttggaacatttctcacaatttgcttatg-catctgatatcatagGTTGCAACTGTACTCCTTTGTTGTGCATTTGTATACGACATCTTTTGGGTATTCATATCTCCAGTGATATTCCAGAAGAGTGTTATGATTACA

upper sequence: AT2G43070.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: GLYMA10G44490.1 (Glycine max), 3'ss of exon 9
---------------------------------------gtattttatctagtttgctgtgtagtgaattatgattgttctc-tgttatgcttataatggtctgtactccagGTTGCGACTGTACTTCTTTGCTGCGCATTTGTCTATGACATTTTCTGGGTCTTCATATCTCCATTGATATTTCACGAGAGTGTTATGATTGTG
                                        |   |||   | || | |      |   ||   |   |||||    | |||||||         ||    ||||||| |||||||| || || || |||||||| || ||||| || ||||| |||||||||||  ||||||| ||  ||||||||||||||   
gtacctgaatgaattccttgtgtttatattatgctgttatttccttactcatttcgttccaatatctgttggaacatttctcacaatttgcttatg-catctgatatcatagGTTGCAACTGTACTCCTATGTTGTGCATTTGTATACGACATCTTTTGGGTATTCATATCTCCTGTGATATTCCAGAAGAGTGTTATGATTACA

upper sequence: AT2G43070.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: Vv05s0062g01250.t01 (Vitis vinifera), 3'ss of exon 9
---------------------------gtatttta-tctagtttgctgtgtagtgaattatgat-tgttctctgttatgcttataatggtctgtactccagGTTGCGACTGTACTTCTTTGCTGCGCATTTGTCTATGACATTTTCTGGGTCTTCATATCTCCATTGATATTTCACGAGAGTGTTATGATTGTG
                            ||| ||| | |  |      | |  | | | ||| |     ||||    ||    |  |  |||  || | |||||||  ||||||||||||| || |||||||| |||||||| ||||||||||||||||| ||| | |||||  | || ||||||||||| |  
atatttataagaagaatgagaaatcacttatcttaatgttttgaatcttttgataactcatgctacacactcttgcctgacatttgttatcttcacac-agGTTGCTTCTGTACTTCTTTGTTGTGCATTTGTTTATGACATCTTCTGGGTCTTCATATCACCAGTAATATTCAAAGACAGTGTTATGATAGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtgtagtgaattatgattgttctctgttatgcttataatggtctgtactccagGTTGCGACTGTACTTCTTTGCTGCGCATTTGTCTATGACATTTTCTGGGTCTTCATATCTCCATTGATATTTCACGAGAGTGTTATGATTGTG
          aattatgatt  TA-rich tract