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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTAAGGATTCCTCGGTTCTTTGATCCTTGGGGTGGTTATGACATGATTGGTTTTGGGGACATCCTCTTCCCCGGTTTGCTCATTTCCTTTGCTTCCAGgtacttttagtcagtgacattcttagagcttcaaagaacaacttggaattccatctttgcccatactttctccagagtgtctttctcaacgattctctcatccaatcctctcccacgattaatacttgctccactctttgatctcag

Basic information

species Arabidopsis thaliana
transcript AT2G43070.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G43070.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: LOC_Os11g24540.2 (Oryza sativa), 5'ss of exon 11
TACTAAGGATTCCTCGGTTCTTTGATCCTTGGGGTGGTTATGACATGATTGGTTTTGGGGACATCCTCTTCCCCGGTTTGCTCATTTCCTTTGCTTCCAGgtacttttagtcagtgacattcttagagcttcaaagaacaacttggaattccat-ctttgcccatacttt-ctccagagtgtctttc--tcaacgattctctcatccaatcctctcccacgattaatacttgctccactctttgatctcag
|  |||| || ||||| ||||||||||| |||||||| ||||||||||| || ||||| |||||  | ||||| || |||||  || | ||    | |||||| | |     |   | |||  |  |   | ||     |||||    ||  || | |||     |||   | | | ||||||  |   |     | | |                                                   
TCTTAAGAATACCTCGTTTCTTTGATCCATGGGGTGGCTATGACATGATAGGCTTTGGTGACATTATTTTCCCTGGATTGCTAGTTGCATTCAGCTACAGgtattat--actatatatattgctgcaatat-aagttgtaacttctcttttgatgccttggtttcactggacgctaaagtgtcggtaggttggtaaatatact------------------------------------------------

upper sequence: AT2G43070.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GRMZM2G082330_T01 (Zea mays), 5'ss of exon 11
TACTAAGGATTCCTCGGTTCTTTGATCCTTGGGGTGGTTATGACATGATTGGTTTTGGGGACATCCTCTTCCCCGGTTTGCTCATTTCCTTTGCTTCCAGgtactt---ttagtcagtgacattcttagagcttcaaagaacaacttggaattccatctttgcccatactttctccagagtgtctttctcaacgattctctcatccaatcctctcccacgattaatacttgctccactctttgatctcag
| |||||||| || || ||||||||||| |||||||||||||| ||||| || ||||| |||||  ||||||| || |||||  ||   ||    |  |||||  |   || | ||   ||||| ||           || | | |   | ||||| ||  | |   || |     | | | |  || |   |   |     ||                                              
TCCTAAGGATACCCCGCTTCTTTGATCCATGGGGTGGTTATGATATGATAGGCTTTGGTGACATTATCTTCCCTGGATTGCTTGTTGGATTCAGCTATAGgtatgtgattttgccatatacattatttacttccttgtgatccatt---agttcca-ctaaggcttcacgtatagaacaatatagttgtgcgctggttgtctat----------------------------------------------

upper sequence: AT2G43070.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA18G53880.1 (Glycine max), 5'ss of exon 10
-TACTAAGGATTCCTCGGTTCTTTGATCCTTGGGGTGGTTATGACATGATTGGTTTTGGGGACATCCTCTTCCCCGGTTTGCTCATTTCCTTTGCTTCCAGgtacttttagtcagtgacattcttagagcttcaaagaacaacttggaattccatctttgcccatactttctccagagtgtctttctcaacgattctctcatccaatcctctcccacgattaatacttgctccactctttgatctcag
 |  | ||  |||||||  | |||||||| ||||| ||||||||||||||||| ||||| || || || || || |||||||| ||||||||||||   |||||  || | |   | |  |  |||       | | ||   |   || || ||   |||   ||         |||   |   | | || ||||     ||   ||  |  |                                   
CTTTTGAGATTTCCTCGTCTTTTTGATCCCTGGGGAGGTTATGACATGATTGGATTTGGAGATATTCTGTTTCCTGGTTTGCTTATTTCCTTTGCTCATAggta--ttgaattccttatttagttaacatcatatataaatgca-agatttacaaaattgaagatgt-------agataatagatatgaatgattactgtat---attttggc-----------------------------------

upper sequence: AT2G43070.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA08G47600.1 (Glycine max), 5'ss of exon 10
TACTAAGGATTCCTCGGTTCTTTGATCCTTGGGGTGGTTATGACATGATTGGTTTTGGGGACATCCTCTTCCCCGGTTTGCTCATTTCCTTTGCTTCCAGgtacttttagtcagtgacattcttagagcttcaaagaacaacttggaattccatctttgcccatactttctccagagtgtctttctcaacgattctctcatccaatcctctcccacgattaatacttgctccactctttgatctcag
|  | ||  |||||||  | |||||||| ||||| ||||||||||||||||| ||||| || || || || || |||||||| ||||||||||||   |||||||          ||  | ||||  |  ||||  | ||  |   ||| | |  |||      ||    |  |   |||   | | || |  | | |   |  | |       ||                               
TTTTGAGATTTCCTCGTCTTTTTGATCCCTGGGGAGGTTATGACATGATTGGATTTGGAGATATTCTGTTTCCTGGTTTGCTTATTTCCTTTGCTCATAGgtact----------gaattccttattgagtcaac-atcatatataaatgctagattt------acaacattgaagatgtagatgtgaatggatattttggcttaccacaaaagaca------------------------------

upper sequence: AT2G43070.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA20G39260.1 (Glycine max), 5'ss of exon 10
TACTAAGGATTCCTCGGTTCTTTGATCCTTGGGGTGGTTATGACATGATTGGTTTTGGGGACATCCTCTTCCCCGGTTTGCTCATTTCCTTTGCTTCCAGgtacttttagtcagtgacattcttagagcttcaa-----agaacaacttg-gaattccatctttgcccatactt-tctccagagtgtctttctcaacgattctctcatcc-----aatcctctcccacgattaatacttgctccactctttgat---ctcag
|  | ||  |||||||  | | ||||||||||||||| ||||| |||||||| ||||| || || ||||| || ||||||||  |||||||||||   ||||| |      |  |     ||  | | ||| ||      ||| |  ||   || | | |    |   | |||| | | ||   | |  || |    | || |||  | |     |||   |      ||  |    ||| |    | ||||||   |||||
TTTTGAGATTTCCTCGTCTTTCTGATCCTTGGGGTGGCTATGATATGATTGGATTTGGAGATATTCTCTTTCCTGGTTTGCTTGTTTCCTTTGCTCGTAGgtattgaattccttttttggtcaaaaaacttgaataaatggaagattttataaacttctttgaagataacacttgttttcaatatttgcttttgtgtgtttttcttcttctttttaatgtacatttgagaagatgcattgttatggtttttgattgtctcag

upper sequence: AT2G43070.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: GLYMA10G44490.1 (Glycine max), 5'ss of exon 11
TACTAAGGATTCCTCGGTTCTTTGATCCTTGGGGTGGTTATGACATGATTGGTTTTGGGGACATCCTCTTCCCCGGTTTGCTCATTTCCTTTGCTTCCAGgtact----------tttagtcagtgacattct-----tagagcttcaaagaacaacttggaa----ttccatctttgcccatactttctccagagtgtctttctcaacgattctctcatccaatcctctcccacgattaatacttgctccactctttgatctcag
|  | ||  |||||||  | | ||||||||||||||| ||||| |||||||| ||||| || || ||||| || ||||||||  |||||||| ||   ||||| |          ||| ||||   |  ||       | ||   | ||  |||  ||  |||    | |  |  ||  | ||| || |    | |||| | | |      |  | | |    | | | |   | |||  ||  ||       | | |  ||||||
TTTTGAGATTTCCTCGTCTTTCTGATCCTTGGGGTGGCTATGATATGATTGGATTTGGAGATATTCTCTTTCCTGGTTTGCTTGTTTCCTTTACTCGTAGgtattgaattccttatttggtcaaaaaacttgaataaatggaagattaataaacttctctgaagatatacacttgttttcaatatttgccttcgtgtgtgtgtgtttttcttctttttaatgta-catttgagaagatacattgttatggttttttattgtctcag

upper sequence: AT2G43070.1 (Arabidopsis thaliana), 5'ss of exon 11
lower sequence: Vv05s0062g01250.t01 (Vitis vinifera), 5'ss of exon 11
TACTAAGGATTCCTCGGTTCTTTGATCCTTGGGGTGGTTATGACATGATTGGTTTTGGGGACATCCTCTTCCCCGGTTTGCTCATTTCCTTTGCTTCCAGgtact-tttagtcagtgacattcttagagcttcaaagaacaacttggaattccatctttg--cccatactttctccagagtgtctttctcaacgattctctcatccaatcctctcccacgattaatacttgctccactctttgatctcag
|  | ||  ||||||| |||||||||||||||||||||||||| |||||||| ||||||||||| |||||||| |||||||||||||| ||||||| |||||||| ||||  | || |  ||   ||    | | | ||||     |  |   ||  | |  || ||| ||||     ||| | |||   ||  ||   |                                                  
TGTTGAGAGTTCCTCGTTTCTTTGATCCTTGGGGTGGTTATGATATGATTGGCTTTGGGGACATTCTCTTCCCTGGTTTGCTCATTTCATTTGCTTTCAGgtactctttacactgtcaagtttccagtaagtgagataacagtgaaggttatgattatggatcctatattttcctttaagtttttttaataaaaatcaac--------------------------------------------------