Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGTCAGTTGCTCAAGTGAAGCACTACATACTCTTCAAGGCACAGTGCTTTACTCATCCCTCACTGGGGAAGTTTTGAGGCTGCAgtatccttcacttcttcccattttatttctttgttttttactcgtgggacttcaccgctttccgaaaaactgacttaacaagcaatattagatatgctag

Basic information

species Arabidopsis thaliana
transcript AT2G42240.3
intron # 9
splice site 5'
intron type U12 (go to U12 genes for details)

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116391417|gb|EG434009.1|EG434009
EST:     CAAGGCACAGTGCTTTACTCATCCCTCACTGGGGAAGTTTTGAGGCTGCA                         ATCACGGATGGGAATGGGTAAGAAGATTAATTGGGGTTAGAATT
genomic: CAAGGCACAGTGCTTTACTCATCCCTCACTGGGGAAGTTTTGAGGCTGCAgtatccttca ... gatatgctagATCACGGATGGGAATGCGTAAGAAGATTAATTAGGGTTAGAATT
EST: gi|116391418|gb|EG434010.1|EG434010
EST:     CAAGGCACAGTGCTTTACTCATCCCTCACTGGGGAAGTTTTGAGGCTGCA                         ATCACGGATGGGAATGCGTAAGAAGATTAATTAGGGTTAGAATTGATTAAG
genomic: CAAGGCACAGTGCTTTACTCATCCCTCACTGGGGAAGTTTTGAGGCTGCAgtatccttca ... gatatgctagATCACGGATGGGAATGCGTAAGAAGATTAATTAGGGTTAGAATTGATTAAG
EST: gi|116391492|gb|EG434084.1|EG434084
EST:     CAAGGCACAGTGCTTTACTCATCCCTCACTGGGGAAGTTTTGAGGCTGCAATATGCTA                  
genomic: CAAGGCACAGTGCTTTACTCATCCCTCACTGGGGAAGTTTTGA-G--GC----TGC-Agtatccttca ... gat
EST: gi|116391492|gb|EG434084.1|EG434084
EST:     CAAGGCACAGTGCTTTACTCATCCCTCACTGGGGAAGTTTTGAGGCTGCAATATGCTA                  
genomic: CAAGGCACAGTGCTTTACTCATCCCTCACTGGGGAAGTTTTGA-G--GC----TGC-Agtatccttca ... gat
EST: gi|86072037|gb|DR367794.1|DR367794
EST:     CAAGGCACAGTGCTTTACTCATCCCTCACTGGGGAAGTTTTGAGGCTGCA                         ATATGCTAGATCACGGATGGGAATGCGTAAGAAGATTAATTAGGGCTAGAA
genomic: CAAGGCACAGTGCTTTACTCATCCCTCACTGGGGAAGTTTTGAGGCTGCAgtatccttca ... gatatgctagAT---C-A---C--GGATGGGAATGCGTAAGAAGATTAATTAGGGTTAGAA