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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTAAGGCGGCAGATCCTTGTCCAACACTTTTCATAGCGAATATGGGACCAAATTGCACCGAAGCTGAGCTAATTCAAGTTTTCTCGAGgtaagaatactctattctccacgcaaaactgtaaccactagagatagttttcactctctttcctctcag

Basic information

species Arabidopsis thaliana
transcript AT2G42240.3
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116391476|gb|EG434068.1|EG434068
EST:     CCAAATTGCACGGAAGCTGAGCTAATTCAAGTTTTCTCGAG                         ATGCCGTGGATTCTTGAAGCTGAAGATTCAGGGTACATATGGGACTCCTGT
genomic: CCAAATTGCACCGAAGCTGAGCTAATTCAAGTTTTCTCGAGgtaagaatac ... ttcctctcagATGCCGTGGATTCTTGAAGCTGAAGATTCAGGGTACATATGGGACTCCTGT
EST: gi|116391480|gb|EG434072.1|EG434072
EST:     AATATGGGACCAAATTGCACCGAAGCTGAGCTAATTCAAGTTTTCTCGAG                         ATGCCGTGGATTCTTGAAGCTGAAGATTCAGGGTACATATGGGACTCCTGT
genomic: AATATGGGACCAAATTGCACCGAAGCTGAGCTAATTCAAGTTTTCTCGAGgtaagaatac ... ttcctctcagATGCCGTGGATTCTTGAAGCTGAAGATTCAGGGTACATATGGGACTCCTGT
EST: gi|116391488|gb|EG434080.1|EG434080
EST:     AATATGGGACCAAATTGCACCGAAGCTGAGCTAATTCAAGTTTTCTCGAG                         ATGCCGTGGATTCTTGAAGCTGAAGATTCAGGGTACATATGGGACTCCTGT
genomic: AATATGGGACCAAATTGCACCGAAGCTGAGCTAATTCAAGTTTTCTCGAGgtaagaatac ... ttcctctcagATGCCGTGGATTCTTGAAGCTGAAGATTCAGGGTACATATGGGACTCCTGT
EST: gi|116391485|gb|EG434077.1|EG434077
EST:     AATATGGGACCAAATTGCACCGAAGCTGAGCTAATTCAAGTTTTCTCGAG                         ATGCCGTGGATTCTTGAAGCTGAAGATTCAGGGTACATATGGGACTCCTGT
genomic: AATATGGGACCAAATTGCACCGAAGCTGAGCTAATTCAAGTTTTCTCGAGgtaagaatac ... ttcctctcagATGCCGTGGATTCTTGAAGCTGAAGATTCAGGGTACATATGGGACTCCTGT
EST: gi|116391481|gb|EG434073.1|EG434073
EST:     AATATGGGACCAAATTGCACCGAAGCTGAGCTAATTCAAGTTTTCTCGAG                         ATGCCGTGGATTCTTGAAGCTGAAGATTCAAGGTACATATGGGACTCCTGT
genomic: AATATGGGACCAAATTGCACCGAAGCTGAGCTAATTCAAGTTTTCTCGAGgtaagaatac ... ttcctctcagATGCCGTGGATTCTTGAAGCTGAAGATTCAGGGTACATATGGGACTCCTGT
EST: gi|116391487|gb|EG434079.1|EG434079
EST:     AATATGGGACCAAATTGCACCGAAGCTGAGCTAATTCAAGTTTTCTCGAG                         ATGCCGTGGATTCTTGAAGCTGAAGATTCAGGGTACATATGGGACTCCTGT
genomic: AATATGGGACCAAATTGCACCGAAGCTGAGCTAATTCAAGTTTTCTCGAGgtaagaatac ... ttcctctcagATGCCGTGGATTCTTGAAGCTGAAGATTCAGGGTACATATGGGACTCCTGT
EST: gi|164228686|gb|ES119679.1|ES119679
EST:     AATATGGGACCAAATTGCACCGAAGCTGAGCTAATTCAAGTTTTCTCGAG                         ATGCCGTGGATTCTTGAAGCTGAAGATTCAGGGTACATATGGGACTCC
genomic: AATATGGGACCAAATTGCACCGAAGCTGAGCTAATTCAAGTTTTCTCGAGgtaagaatac ... ttcctctcagATGCCGTGGATTCTTGAAGCTGAAGATTCAGGGTACATATGGGACTCC
EST: gi|116391479|gb|EG434071.1|EG434071
EST:     CCGAAGCTGAGCTAATTCAAGTTTTCTCGAG                         ATGCCGTGGATTCTTGAAGCTGAAGATTCAGGGTACATATGGGACTCCTGT
genomic: CCGAAGCTGAGCTAATTCAAGTTTTCTCGAGgtaagaatac ... ttcctctcagATGCCGTGGATTCTTGAAGCTGAAGATTCAGGGTACATATGGGACTCCTGT
EST: gi|116391483|gb|EG434075.1|EG434075
EST:     AATATGGGACCAAATTGCACCGAAGCTGAGCTAATTCAAGTTTTCTCGAG                         ATGCCGTGGATTCTTGAAGCTGAAGATTCAGGGTACATATGGGACTCCTGT
genomic: AATATGGGACCAAATTGCACCGAAGCTGAGCTAATTCAAGTTTTCTCGAGgtaagaatac ... ttcctctcagATGCCGTGGATTCTTGAAGCTGAAGATTCAGGGTACATATGGGACTCCTGT
EST: gi|86072037|gb|DR367794.1|DR367794
EST:     AATATGGGACCAAATTGCACCGAAGCTGAGCTAATTCAAGTTTTCTCGAG                         ATGCCGTGGATTCTTGAAGCTGAAGATTCAGGGTACATATGGGACTCCTGT
genomic: AATATGGGACCAAATTGCACCGAAGCTGAGCTAATTCAAGTTTTCTCGAGgtaagaatac ... ttcctctcagATGCCGTGGATTCTTGAAGCTGAAGATTCAGGGTACATATGGGACTCCTGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGTAAGGCGGCAGATCCTTGTCCAACACTTTTCATAGCGAATATGGGACCAAATTGCACCGAAGCTGAGCTAATTCAAGTTTTCTCGAGgtaagaatactctattctccacgcaaaactgtaaccactagagatagttttcactctctttcctctcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA