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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTTCTTACCTATGCAAATGGGAAATCCGCTGCTCGGATTCAAGACCATCTTCGGCCCAATGGTGCTCATCGCTGGCACAACTACAAGACGTATCCAAAgtatgttcttttcctcacttagcttaaacatagacattcattcttttgcttttgtaatctgacattgattccatctttgttgtgacag

Basic information

species Arabidopsis thaliana
transcript AT2G41451.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G41451.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA03G28810.1 (Glycine max), 5'ss of exon 5
ATTTTCTTACCTATGCAAATGGGAAATCCGCTGCTCGGATTCAAGACCATCTTCGGCCCAATGGTGCTCATCGCTGGCACAACTACAAGACGTATCCAAAgtatgtt--------cttttcctcactta-gcttaaacatagacattcattcttttgcttttgtaatctgac-attgattccatctttgttgtgacag---
|||||||||| |||| |||||||||||| || ||| | ||||| || ||||| || || |||||||| ||  | ||||||||||| | || |   || |||||||||        ||     ||| ||| | ||   |||    |   |    |     | || | | | || |   |    || ||| | || |  |   
ATTTTCTTACTTATGGAAATGGGAAATCAGCAGCTAGAATTCAGGATCATCTCCGTCCTAATGGTGCCCACAGATGGCACAACTATATGAAGACACCTAAgtatgttggtcctgcctgccattcatttatgattgtgcattagaaaatacatgtgcatatatgcatttttactaccaacaatat-tttatagttaagggta