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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttcttttcctcacttagcttaaacatagacattcattcttttgcttttgtaatctgacattgattccatctttgttgtgacagCATCAAGGAACTAGACGAAGCTGCGATTCTTCACTACACTTACTCGAAATTTTCAGATCTTACTTCAAGACGTGATCGATGTGGCTGCAAACCAACAAAA

Basic information

species Arabidopsis thaliana
transcript AT2G41451.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G41451.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA03G28810.1 (Glycine max), 3'ss of exon 5
-------gtatgttcttttcctcacttagcttaaacatagaca-ttcattcttttgcttttgtaatctgacattga----ttccatctttgttgtgacagCATCAAGGAACTAGACGAAGCTGCGATTCTTCACTACACTTACTCGAAATTTTCAGATCTTACTTCAAGACGTGATCGATGTGGCTGCAAACCAACAAAA
        ||   | |||    | |  |  ||||   || | | | |||| |||   | |    || | ||| |||    | | |    | ||    |||    |   || | || ||||||||  |||| || ||||| ||| | |||||||| ||| | ||||||||||||||||||||||||||||| || ||||||
caattgaataaaatgtttaaagccccaatgttaatagtaaagaatgcattatttctttgtctatattttacactgacctgtacaacaaatctttcatcagTGAGATAAAATTGGAAGAAGCTGCTGTTCTGCATTACACCTACACCAAATTTTCTGATTTGACTTCAAGACGTGATCGATGTGGCTGCAAGCCTACAAAA

upper sequence: AT2G41451.1 (Arabidopsis thaliana), 3'ss of exon 7
lower sequence: GLYMA19G31560.1 (Glycine max), 3'ss of exon 7
-gtatgttcttttcctcacttagct--taaacatagacattcattcttttgcttttgtaatctgacattgattccatctttgttgtga---------cagCATCAAGGAACTAGACGAAGCTGCGATTCTTCACTACACTTACTCGAAATTTTCAGATCTTACTTCAAGACGTGATCGATGTGGCTGCAAACCAACAAAA
  ||   | |||    | ||  | |  |||  ||        | |   ||| || | |      |  |||     |||| | |    |         |||    |   || | || ||||||||  |||| || ||||| ||| | |||||||| ||| | ||||||||||||||| | ||||||||||| || ||||||
aataaactatttaaagccctatgttagtaattattagtgaagaatgcattgtttctatgtctatattttgcactgatctgtatgacaaatcattcatcagTGAGATAAAATTGGAAGAAGCTGCTGTTCTGCATTACACCTACACCAAATTTTCTGATTTGACTTCAAGACGTGATAGGTGTGGCTGCAAGCCTACAAAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acattcattcttttgcttttgtaatctgacattgattccatctttgttgtgacagCATCAAGGAACTAGACGAAGCTGCGATTCTTCACTACACTTACTCGAAATTTTCAGATCTTACTTCAAGACGTGATCGATGTGGCTGCAAACCAACAAAA
                                        tctttgtt  CT-rich tract
                ttttgtaat  TA-rich tract