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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatgagtaaatgaatcgatgatgataaactagcagtaaaaacatcaataagagtctcatctgactcggtctatgcgcagGTGGTGCTTTGATGTTGAATTGGTGTACTTGTGCAAGCGTTTTAATATACCAATGGTTGAAATCTCTGTGAAATGGTCCGAAATTCCCGGGTCTAAAGTC

Basic information

species Arabidopsis thaliana
transcript AT2G39630.2
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125241467|gb|EL255552.1|EL255552
EST:     AAACGTCCATCTGAAAAG                         GTGGTGCTTTGATGTTGAATTGGTGTACTTGTGCAAGCGTTTTAATATACC
genomic: AAACGTCCATCTGAAAAGgtatatgagt ... ctatgcgcagGTGGTGCTTTGATGTTGAATTGGTGTACTTGTGCAAGCGTTTTAATATACC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaactagcagtaaaaacatcaataagagtctcatctgactcggtctatgcgcagGTGGTGCTTTGATGTTGAATTGGTGTACTTGTGCAAGCGTTTTAATATACCAATGGTTGAAATCTCTGTGAAATGGTCCGAAATTCCCGGGTCTAAAGTC
                                 atctgac  putative branch site (score: 3)
           taaaaacatcaataa  TA-rich tract