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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgcccttagttttgactgttaaaacttcagagaaactagaaattgtgctataaatttcctgatctcctagcctctcagATCAATGCAGTAGCCAGAGAAGAATATTCAATCAGAAATCCAGCATCTAAGGATATGGATTTCAAAATAGGTGATGTTCAAGTATCCGCATTTGGTTCTC

Basic information

species Arabidopsis thaliana
transcript AT2G39630.2
intron # 6
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttcagagaaactagaaattgtgctataaatttcctgatctcctagcctctcagATCAATGCAGTAGCCAGAGAAGAATATTCAATCAGAAATCCAGCATCTAAGGATATGGATTTCAAAATAGGTGATGTTCAAGTATCCGCATTTGGTTCTC
                                 tcctgat  putative branch site (score: 3)
                                       tctcctagcctctc  CT-rich tract
                         tataaattt  TA-rich tract