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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGGATTCTCAAAAGAATTATCTTTTTAAATGTGATCAACTAAAGTCTATTCGCCAAGACCTCACAGTACAACGGATACACAATCATTTAACAGCTAAGgtacataactgacttccaataatgtcgagtgttattgcatgtaggattcatttcctgttggaacgtttatcttatttacacccaattagcatgtttataatggttccatgtgcaatctcaatttcag

Basic information

species Arabidopsis thaliana
transcript AT2G39340.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G39340.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: LOC_Os05g38730.1 (Oryza sativa), 5'ss of exon 10
TCAGGATTCTCAAAAGAATTATCTTTTTAAATGTGATCAACTAAAGTCTATTCGCCAAGACCTCACAGTACAACGGATACACAATCATTTAACAGCTAAGgtacataactgacttccaataatgtcgagtgttattgcatgt---aggattcatttcctgttggaacgtt-tatcttatttacacccaattagcatgtttataatggttccatgtgcaatctcaatttcag
| |    ||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||| ||  | || || ||| |  | || |  ||||||         ||||  || |       |  |||||    |   |  ||   ||  |   | |||   |  |  |  |||| |   | |||      | |  ||                          
TGAAACATCTCAAAAGAATTATCTTTATAAATGTGATCAACTGAAGTCTATTCGCCAAGATCTCACAGTTCAGAGAATCCAGAATGAACTTACTGTCAAGgtatcct-----cttctcatgaatcatgatcctattgtgcttaccacaatgtgttagcaactagaaaactgcagttcctttata---agttacttctgtcaagatatc-----------------------

upper sequence: AT2G39340.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: LOC_Os01g61930.1 (Oryza sativa), 5'ss of exon 8
TCAGGATTCTCAAAAGAATTATCTTTTTAAATGTGATCAACTAAAGTCTATTCGCCAAGACCTCACAGTACAACGGATACACAATCATTTAACAGCTAAGgtacataactgacttccaataatgtcgagtgttattgcatgtaggattcatttcctgttggaacgtttatcttatttacaccc-aattagcatgtttataatggttccatgtgcaatctcaatttcag
| |    ||||| ||||||||||| | ||||||||| |||||||| || ||||| ||||| || || || ||  |||| || ||  |  | || |  | ||||     |     |      |  | | |||||||   ||   | |||    |||||||       |||    |||| |||   || || ||| || | ||||  |||                    
TGAAACATCTCAGAAGAATTATCTGTATAAATGTGACCAACTAAAATCAATTCGGCAAGATCTTACTGTTCAGAGGATTCAGAACGAGCTGACTGTCATGgta----gcctttcttagcccactttgtgtgttat---atactgcattatactcctgttcactatgttagtccattttcacgggaaatatcat-ttcacaatgtatcc--------------------

upper sequence: AT2G39340.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GRMZM2G134753_T02 (Zea mays), 5'ss of exon 8
TCAGGATTCTCAAAAGAATTATCTTTTTAAATGTGATCAACTAAAGTCTATTCGCCAAGACCTCACAGTACAACGGATACACAATCATTTAACAGCTAAGgtacataactgacttccaataatgtcgagtgttattgcatgtaggattcatttcctgttggaac---gtttatcttatttacacccaattagcatgtttataatggttccatgtgcaatctcaatttcag
| |    || ||||||||||||||||  || |||||||||||||| ||||| |||||||| || ||||| ||  | || || ||| |  | ||    ||||||  |  |  |||    ||    ||  |   | |     |||  ||| |          ||||   || ||| ||| ||||      |||  |  || | |                            
TGAAACATCACAAAAGAATTATCTTTACAAGTGTGATCAACTAAAATCTATCCGCCAAGATCTTACAGTTCAGAGAATCCAGAATGAACTGACTATAAAGgtatttttc-aactgtacatggcatcctgcactctatagcgtactatttacaagggaaatgaacactgtctattttacttactattg-ttaataaattaaga----------------------------

upper sequence: AT2G39340.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA20G38620.1 (Glycine max), 5'ss of exon 12
TCAGGATTCTCAAAAGAATTATCTTTTTAAATGTGATCAACTAAAGTCTATTCGCCAAGACCTCACAGTACAACGGATACACAATCATTTAACAGCTAAGgtacataactgacttcca-ataatgtcgagtgttattgcat-gtaggattcatttcctgttggaacgttt--atcttatttacacccaattagcatgtttataatggttccatgtgcaatctcaatttcag
|||  |||| || |||||||| || | ||||||||| ||  |||||||||||||||||||||| || || ||||| |||| |||||| |||||||  |||||||  |  ||  |  || ||  || ||  |   |||  ||  | || |    ||  | ||   |  |||  || | ||     |||| ||  | |  ||                               
TCAAAATTCCCAGAAGAATTACCTCTATAAATGTGACCAGTTAAAGTCTATTCGCCAAGACCTAACTGTTCAACGAATACGCAATCAATTAACAGTCAAGgtactcatttgtttgacatattctgacggatagcattctatcattggttctgcttattcttaatatttttcaatttaatagttccccacttcccctactt-------------------------------

upper sequence: AT2G39340.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA10G43870.1 (Glycine max), 5'ss of exon 8
TCAGGATTCTCAAAAGAATTATCTTTTTAAATGTGATCAACTAAAGTCTATTCGCCAAGACCTCACAGTACAACGGATACACAATCATTTAACAGCTAAGgtacataactgacttcca-ataatgtcgagtgttattgcatgtaggattcatttcctgttggaacgttt---atcttatttacacccaattagcatgtttataatggttccatgtgcaatctcaatttcag
|||  |||| || |||||||| || | |||||| || ||  ||||||||||||| |||||||| || || ||||| |||| |||||| |||||||  |||||||  |  ||  |   | ||  || ||| |   |||  ||    | |||   |  |  |  |  ||||   || | ||     |||| ||  | |   |                               
TCAAAATTCCCAGAAGAATTACCTCTATAAATGCGACCAGTTAAAGTCTATTCGTCAAGACCTAACTGTTCAACGAATACGCAATCAATTAACAGTCAAGgtactcatttgtttgatatattctgacgaatagcattctatcattggttctccttattcttaatagttttcaatttaatagttccccacttcccctacat-------------------------------

upper sequence: AT2G39340.1 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv13s0067g03720.t01 (Vitis vinifera), 5'ss of exon 3
TCAGGATTCTCAAAAGAATTATCTTTTTAAATGTGATCAACTAAAGTCTATTCGCCAAGACCTCACAGTACAACGGATACACAATCATTTAACAGCTAAGgtacataactgacttccaataatgtcgagtgttattgcatgtaggattcatttcctgttggaacgtttatcttatttacacccaattagcatgtttataatggttccatgtgcaatctcaatttcag
|||| ||||||| ||||| || |||| ||||||||||||| | || || ||||||||||| || || || ||||||||||||||| |  |||||| ||||||| ||| |  | |    ||| ||     |||||||   ||  ||  |||| |  || |    |   |     ||| |      |  |    |  |  ||  ||                       
TCAGAATTCTCACAAGAACTACCTTTATAAATGTGATCAATTGAAATCGATTCGCCAAGATCTTACTGTGCAACGGATACACAATGAGCTAACAGTTAAGgtatatatc--attcttgatattgctatatgttattctctgatgg--tcatgtaatgatcctcctcctcatcaattgatgatgtacaaatgaggatgaaaatgt-----------------------