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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGGAAGACATTGACTGGGATGCACTAACTGTTAAAGGCACTTGCCAGGAAATTGAGAAACGTTATCTCCGTCTGACTTCTGCGCCAGATCCTGCCACCgtaaatattactatcttatattcttatacctagtattctttttgacaccatgactgatatttttgattgacttattttcag

Basic information

species Arabidopsis thaliana
transcript AT2G39340.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G39340.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: LOC_Os05g38730.3 (Oryza sativa), 5'ss of exon 3
TGTGGAAGACATTGACTGGGATGCACTAACTGTTAAAGGCACTTGCCAGGAAATTGAGAAACGTTATCTCCGTCTGACTTCTGCGCCAGATCCTGCCACCgt---aaatattactatcttatattctt-atacctagt--attctttttgacaccatgactgatattttt---gattgacttattttcag----------------------------------
|||||| || || || ||||||||| | || || || || || ||||| |||||||||||||| |||||||| || || || || || ||||||||||| ||   |||    || | ||  | | ||  || | || |  |      |  | | ||   ||  | | |||    |||   | || |  |                                   
TGTGGAGGATATGGATTGGGATGCATTGACAGTAAAGGGGACATGCCAAGAAATTGAGAAACGATATCTCCGGCTTACATCAGCACCTGATCCTGCCACAgtaataaaacccaccaactgttgtcctggattcttaattgaaaagcatcaatagcaaatcttttttcttttgcaatttgatcatatctactgtttcttctccttatctgaataatgcttggcag

upper sequence: AT2G39340.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GRMZM2G390400_T01 (Zea mays), 5'ss of exon 7
TGTGGAAGACATTGACTGGGATGCACTAACTGTTAAAGGCACTTGCCAGGAAATTGAGAAACGTTATCTCCGTCTGACTTCTGCGCCAGATCCTGCCACCgta--aatatt-----actatctta---tattcttatacctagtattct--ttttgacaccat-gactgat-atttttgattgacttattttcag---------------------------------
|||||| || || || ||||||||||| || || ||||| || || ||||||||||||||||| ||||| || || ||    || || ||||||||||  |||  || | |     | | |||||   || |||     | |    |||  | ||||| |  | |  ||||   || || || |    | | | |                                 
TGTGGAGGATATGGATTGGGATGCACTGACAGTCAAAGGAACATGTCAGGAAATTGAGAAACGCTATCTACGACTTACAGAAGCACCTGATCCTGCCAAAgtaacaacactcaccaattgtcttactttactctagattcaaagggtctgatgttgacccattaggttgattgcttctgcttaatcactctactgtttgcttgactcttctgagtattttgtttgcag

upper sequence: AT2G39340.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA10G43870.1 (Glycine max), 5'ss of exon 7
TGTGGAAGACATTGACTGGGATGCACTAACTGTTAAAGGCACTTGCCAGGAAATTGAGAAACGTTATCTCCGTCTGACTTCTGCGCCAGATCCTGCCACCgtaaatattactatcttatattcttat-acctagtattctttttgacaccatgactgatatttttgattgacttattttcag---------------------------
||| || || |||||||||||||| |||||||| || || ||||||||||||||||| || ||||| || || || |||||||| || ||||||||||| ||||   || || ||    |||   ||    |  |  |  ||||| |  | |  ||  |   |   | |   | | | | |                            
TGTTGAGGATATTGACTGGGATGCTCTAACTGTGAAGGGTACTTGCCAGGAAATTGAAAAGCGTTACCTGCGCCTAACTTCTGCACCTGATCCTGCCACTgtaatgtttcctctcaggaattgaaattgtgtgctgctacttttgtctgccttcctcttccctcc-actccttgactatgaaccttattaaatttttatgaacttacag

upper sequence: AT2G39340.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA20G38620.1 (Glycine max), 5'ss of exon 11
TGTGGAAGACATTGACTGGGATGCACTAACTGTTAAAGGCACTTGCCAGGAAATTGAGAAACGTTATCTCCGTCTGACTTCTGCGCCAGATCCTGCCACCgtaa-------------------atattactatct--tatattcttatacctagtattctttttgacaccatgactgatatttttgattgactt------attttcag
||| || || |||||||||||||| |||||||| || || ||||||||||||||||| || || || || || || |||||||| || ||||||||||| ||||                   | |||  |  ||  ||  || || | |||     |    |  || || ||||    |   ||  |  | ||      |||| |||
TGTTGAGGATATTGACTGGGATGCTCTAACTGTGAAGGGTACTTGCCAGGAAATTGAAAAGCGCTACCTTCGCCTAACTTCTGCACCTGATCCTGCCACTgtaatgtctcctctcgggaatttaaattgtttgctgctacttttttctgccttcctcttccctccactccttgaccatgaaccttattaaaattttatgaatttacag

upper sequence: AT2G39340.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv13s0067g03720.t01 (Vitis vinifera), 5'ss of exon 2
TGTGGAAGACATTGACTGGGATGCACTAACTGTTAAAGGCACTTGCCAGGAAATTGAGAAACGTTATCTCCGTCTGACTTCTGCGCCAGATCCTGCCACCgtaaatattactatcttatattct-tatacctagtattct-ttttgacacc----atgactgatatttttga---ttgacttattttcag
||| ||||| |||||||||||||| || |||||||| || |||||||||||||| || ||||||||||| || || |||||||| || |||||  | || || | |||  || ||| ||   || | |    || ||||  |||| |  |     ||  || || | |||||   ||   ||| || |||
TGTTGAAGATATTGACTGGGATGCCCTTACTGTTAAGGGAACTTGCCAGGAAATCGAAAAACGTTATCTGCGCCTTACTTCTGCCCCTGATCCCTCTACTgtgattatctctttctcattccctctctttaaagcattccgttttcatgcttaatattcctaatttctttgacacttacattacttgcag