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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGAAGCTCTTCTGTGACAAAGATTACCCTGAGAAACCTCCGACTGTTCGGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATGATACCGGCGTGgtaagagtgtgaattttttgagatttgttgcttttgaattaggtgactgaaatgtgaatttgcatatacgtag

Basic information

species Arabidopsis thaliana
transcript AT2G36060.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G36060.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA19G38450.1 (Glycine max), 5'ss of exon 3
GTTGAAGCTCTTCTGTGACAAAGATTACCCTGAGAAACCTCCGACTGTTCGGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATGATACCGGCGTGgta-agagtgtgaattttttgagatttgttgcttttgaattaggtgactgaaatgtgaatttgcatatacgtag--------------------------
 |||||||| || ||||| ||||| |||||||| || || ||||  || ||||| ||||| || ||||| ||||||||||| || ||||| || || |||||| ||    |   ||||   |   |  | |||||| |  |   | | || ||||    | ||     | |  |                          
ATTGAAGCTGTTTTGTGATAAAGACTACCCTGAAAAGCCCCCGAGCGTCCGGTTTCATTCACGGATCAATATGACTTGTGTTAATCATGAAACTGGAGTGgtacagttcatagtttttcacatgctcttagctttttacgtgcttcaatgcaatggtgctgtggtgggagggggtatacacaatgctaactgctgtgttt

upper sequence: AT2G36060.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA15G21780.1 (Glycine max), 5'ss of exon 2
---------------------GTTGAAGCTCTTCTGTGACAAAGATTACCCTGAGAAACCTCCGACTGTTCGGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATGATACCGGCGTGgtaagagtgtgaattttttgagatttgttgcttttgaattaggtgactgaaatgtgaatttgcatatacgtag-------
                       ||||||| ||  |||| ||||| ||||| || || || || | ||||||||| ||||| || ||||||||||||||||| || ||||| || || | || |  | |   ||||||        | ||| |||  || ||  |   ||| | ||| ||      | |  ||        
ACATGAAGGAAAAATTTATCAACTGAAGCTGTTTGGTGATAAAGACTACCCAGAAAAGCCCCCTAGTGTTCGGTTTCATTCACGAATCAACATGACTTGTgttaatcatgaaacaggagaggcatcatttataattttccacatgcttttgttttataaatatttt-ttgataagtgcatgctaggacatataatcaagtt

upper sequence: AT2G36060.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv06s0080g01080.t01 (Vitis vinifera), 5'ss of exon 3
GTTGAAGCTCTTCTGTGACAAAGATTACCCTGAGAAACCTCCGACTGTTCGGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATGATACCGGCGTGgtaagagtgtgaattt-tttgagatttgttgcttttgaattaggtgactgaaatgt-gaatttgcatatacgtag---------------------------
  ||||||| || ||||| |||||||| || ||||| ||||| | ||| ||||||||||| || |||||||||| |||||| || ||||| || || |||||||   ||||| ||  | ||   | |  |   ||||  | | || | | |||| |  ||||||  | |  |                              
ACTGAAGCTTTTTTGTGATAAAGATTATCCGGAGAAGCCTCCTAGTGTACGGTTCCATTCACGCATCAACATGATTTGTGTGAATCATGAGACTGGAGTGgtaaagttgtgatttgatctgctgtctaattgatttg--tgaagtaattaaaatttcaaatttgtttttctggttacaacatttgatcctgcttccattagt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163979863|gb|ES043410.1|ES043410
EST:     GACTTGTGTCAACCATGATACCGGCGTG                         GTGGATTCAAAGAAGTTTGGGGTTCTTGCAAACTGGCAAAGACAGTACACA
genomic: GACTTGTGTCAACCATGATACCGGCGTGgtaagagtgt ... atatacgtagGTGGATTCAAAGAAGTTTGGGGTTCTTGCAAACTGGCAAAGACAGTACACA
EST: gi|124845906|gb|EH930343.1|EH930343
EST:     GGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATGATACCGGCGTG                         GTGGATTCAAAGAAGTTTGGGGTTCTTGACAAACTGGCAAAGACAGTACAC
genomic: GGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATGATACCGGCGTGgtaagagtgt ... atatacgtagGTGGATTCAAAGAAGTTTGGGGTTCTTG-CAAACTGGCAAAGACAGTACAC
EST: gi|164007349|gb|ES086939.1|ES086939
EST:     GGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATGATACCGGCGTG                         GTGGATTCAAAGAAGTTTGGGGTTCTTGC
genomic: GGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATGATACCGGCGTGgtaagagtgt ... atatacgtagGTGGATTCAAAGAAGTTTGGGGTTCTTGC
EST: gi|86078812|gb|DR374569.1|DR374569
EST:     GGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATGATACCGGCGTG                         GTGGATTCAAAGAAGTTTGGGGTTCTTGCAAACTGGCAAAGACAGTACACA
genomic: GGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATGATACCGGCGTGgtaagagtgt ... atatacgtagGTGGATTCAAAGAAGTTTGGGGTTCTTGCAAACTGGCAAAGACAGTACACA
EST: gi|125214691|gb|EL229011.1|EL229011
EST:     TGTGTCAACCATGATACCGGCGTG                         GTGGATTCAAAGAAGTTTGGGGTTCTTGCAAACTGGCAAAGACAGTACACA
genomic: TGTGTCAACCATGATACCGGCGTGgtaagagtgt ... atatacgtagGTGGATTCAAAGAAGTTTGGGGTTCTTGCAAACTGGCAAAGACAGTACACA
EST: gi|116467250|gb|EG509842.1|EG509842
EST:     GGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATGATACCGGCGTG                         GTGGATTCAAAGAAGTTTGGGGTTCTTGCA
genomic: GGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATGATACCGGCGTGgtaagagtgt ... atatacgtagGTGGATTCAAAGAAGTTTGGGGTTCTTGCA
EST: gi|125273138|gb|EL287223.1|EL287223
EST:     TGACTTGTGTCAACCATGATACCGGCGTG                         GTGGATTCAAAGAAGTTTGGGGTTCTTGCAAACTGGCAAAGACAGTACACA
genomic: TGACTTGTGTCAACCATGATACCGGCGTGgtaagagtgt ... atatacgtagGTGGATTCAAAGAAGTTTGGGGTTCTTGCAAACTGGCAAAGACAGTACACA
EST: gi|125073370|gb|EL137728.1|EL137728
EST:     GGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATGATACCGGCGTG                         GTGGATTCAAAGAAGTTTG
genomic: GGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATGATACCGGCGTGgtaagagtgt ... atatacgtagGTGGATTCAAAGAAGTTTG
EST: gi|125266745|gb|EL280830.1|EL280830
EST:     GGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATGATACCGGCGTG                         GTGGATTCAAAGAAGCTTGGGGTTCTTGCAAACTGGCAAAGACAG
genomic: GGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATGATACCGGCGTGgtaagagtgt ... atatacgtagGTGGATTCAAAGAAGTTTGGGGTTCTTGCAAACTGGCAAAGACAG
EST: gi|124951717|gb|EL027058.1|EL027058
EST:     TTCCATTCGTTCGTATCAACATGACTTGTGTCAACCATGATACCGGCGTG                         GTGGATTCAAAGAAGTTTGGGGTTCTTGCAAACTGG
genomic: TTCCATTCG--CGTATCAACATGACTTGTGTCAACCATGATACCGGCGTGgtaagagtgt ... atatacgtagGTGGATTCAAAGAAGTTTGGGGTTCTTGCAAACTGG
EST: gi|164196005|gb|ES143420.1|ES143420
EST:     GGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATGATACCGGCGTG                         GGTGGATTCAAAGAAGTTTGGGGTTCTTGC
genomic: GGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATGATACCGGCGTGgtaagagtgt ... atatacgtagG-TGGATTCAAAGAAGTTTGGGGTTCTTGC
EST: gi|124800698|gb|EH890335.1|EH890335
EST:     GGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATGATACCGGCGTG                         GTGGATTCAAAGAAGTTTGGGGTTCTT
genomic: GGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATGATACCGGCGTGgtaagagtgt ... atatacgtagGTGGATTCAAAGAAGTTTGGGGTTCTT
EST: gi|164197157|gb|ES078742.1|ES078742
EST:     GTGTCAACCATGATACCGGCGTG                         GTGGATTCAAAGAAGTTTGGGGTTCTTGCAAACTGGCAAAGACAGTACACA
genomic: GTGTCAACCATGATACCGGCGTGgtaagagtgt ... atatacgtagGTGGATTCAAAGAAGTTTGGGGTTCTTGCAAACTGGCAAAGACAGTACACA
EST: gi|116466784|gb|EG509376.1|EG509376
EST:     GGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATGATACCGGCGTG                         GTGGATTCAAAGAAGTTTGGGGTTCTTGCA
genomic: GGTTCCATTCGCGTATCAACATGACTTGTGTCAACCATGATACCGGCGTGgtaagagtgt ... atatacgtagGTGGATTCAAAGAAGTTTGGGGTTCTTGCA